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Report for CCDS103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
103.1 Public Homo sapiens 1 SLC25A33 24 110 108 CCDS HistoryNCBI Gene:84275Re-query CCDS DB by CCDS ID:103.1Re-query CCDS DB by GeneID:84275See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 103.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302692.7 ENSP00000306328.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302692.7Link to Ensembl Protein Viewer:ENSP00000306328.5Re-query CCDS DB by Nucleotide ID:ENST00000302692Re-query CCDS DB by Protein ID:ENSP00000306328
Original member Current member NCBI NM_032315.3 NP_115691.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032315.3Link to Protein Sequence:NP_115691.1Re-query CCDS DB by Nucleotide ID:NM_032315Re-query CCDS DB by Protein ID:NP_115691Link to BLAST:NP_115691.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115691.1 321 Q9BSK2 321 100% 0 0

Chromosomal Locations for CCDS 103.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 9539692 9539747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9553626 9553805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9567284 9567361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9570258 9570358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9573346 9573412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9579954 9580234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9582299 9582501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGCGACGGGCGGCCAGCAGAAGGAGAACACGCTGCTTCACCTCTTCGCCGGCGGGTGTGGAGGCACAG
TTGGTGCTATTTTCACTTGTCCACTAGAAGTCATTAAGACACGGTTGCAGTCTTCAAGATTAGCTCTCCG
GACAGTCTACTATCCTCAGGTTCATCTGGGGACCATTAGTGGAGCTGGAATGGTGAGACCAACATCCGTG
ACACCTGGACTCTTTCAGGTTCTGAAGTCGATCTTGGAGAAAGAGGGACCAAAGTCACTTTTTAGAGGCT
TGGGTCCAAATTTGGTTGGAGTTGCACCATCAAGGGCTGTATACTTTGCATGTTACTCCAAAGCCAAAGA
GCAATTTAATGGCATTTTCGTGCCTAACAGCAATATTGTGCATATTTTCTCAGCTGGCTCTGCAGCTTTT
ATCACAAATTCCTTAATGAATCCTATATGGATGGTTAAAACCCGAATGCAGCTAGAACAGAAAGTGAGGG
GCTCTAAGCAGATGAATACACTCCAGTGTGCTCGTTACGTTTACCAGACCGAAGGCATTCGTGGCTTCTA
TAGAGGATTAACTGCCTCGTATGCTGGAATTTCCGAAACTATAATCTGCTTTGCTATTTATGAAAGTTTA
AAGAAGTATCTGAAAGAAGCTCCATTAGCCTCTTCTGCAAATGGGACTGAGAAAAATTCCACAAGTTTTT
TTGGACTTATGGCAGCTGCTGCTCTTTCTAAGGGCTGTGCCTCCTGCATTGCTTATCCACACGAAGTCAT
AAGGACGAGGCTCCGGGAAGAGGGCACCAAGTACAAGTCTTTTGTCCAGACGGCGCGCCTGGTGTTCCGG
GAAGAAGGCTACCTTGCCTTTTATAGAGGACTGTTTGCCCAGCTTATCCGGCAGATCCCAAATACTGCCA
TTGTGTTGTCTACTTATGAGTTAATTGTGTACCTGTTAGAAGACCGTACTCAGTAA

Translation (321 aa):
MATGGQQKENTLLHLFAGGCGGTVGAIFTCPLEVIKTRLQSSRLALRTVYYPQVHLGTISGAGMVRPTSV
TPGLFQVLKSILEKEGPKSLFRGLGPNLVGVAPSRAVYFACYSKAKEQFNGIFVPNSNIVHIFSAGSAAF
ITNSLMNPIWMVKTRMQLEQKVRGSKQMNTLQCARYVYQTEGIRGFYRGLTASYAGISETIICFAIYESL
KKYLKEAPLASSANGTEKNSTSFFGLMAAAALSKGCASCIAYPHEVIRTRLREEGTKYKSFVQTARLVFR
EEGYLAFYRGLFAQLIRQIPNTAIVLSTYELIVYLLEDRTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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