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Report for CCDS27186.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27186.1 Public Mus musculus 14 Trim13 23 108 98 CCDS HistoryNCBI Gene:66597Re-query CCDS DB by CCDS ID:27186.1Re-query CCDS DB by GeneID:66597See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27186.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039562.7 ENSMUSP00000045009.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039562.7Link to Ensembl Protein Viewer:ENSMUSP00000045009.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039562Re-query CCDS DB by Protein ID:ENSMUSP00000045009
Original member Current member EBI ENSMUST00000165015.8 ENSMUSP00000128509.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165015.8Link to Ensembl Protein Viewer:ENSMUSP00000128509.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165015Re-query CCDS DB by Protein ID:ENSMUSP00000128509
Original member Current member NCBI NM_001164220.1 NP_001157692.1 Accepted alive Link to Nucleotide Sequence:NM_001164220.1Link to Protein Sequence:NP_001157692.1Re-query CCDS DB by Nucleotide ID:NM_001164220Re-query CCDS DB by Protein ID:NP_001157692Link to BLAST:NP_001157692.1
Original member Current member NCBI NM_023233.3 NP_075722.1 Accepted alive Link to Nucleotide Sequence:NM_023233.3Link to Protein Sequence:NP_075722.1Re-query CCDS DB by Nucleotide ID:NM_023233Re-query CCDS DB by Protein ID:NP_075722Link to BLAST:NP_075722.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157692.1 407 Q9CYB0 407 100% 0 0
NP_075722.1 407 Q9CYB0 407 100% 0 0

Chromosomal Locations for CCDS 27186.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 61604536 61605759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGGAGCTGCTTGAAGAAGACCTCACATGCCCAATTTGCTGCAGTTTGTTTGATGACCCCCGAGTGTTGC
CCTGCTCACACAACTTCTGCAAAAAATGCTTAGAAGGGCTCTTAGAGGGGAATGTGCGGAATTCCCTGTG
GAGACCATCTCCCTTCAAGTGTCCTACCTGCCGTAAGGAAACCTCAGCTACTGGAGTCAACAGTCTGCAG
GTCAATTACTCCCTAAAGGGTATCGTGGAGAAATACAACAAAATCAAGATTTCTCCCAAGATGCCAGTGT
GCAAAGGACATTTGGGGCAGCCTCTCAACATCTTCTGCGTAACTGATATGCAGCTGATTTGTGGGATCTG
TGCTACTCGAGGCGAGCACACCAAGCATGTCTTCTCTTCTATTGAAGATGCCTACGCTCGAGAAAAGAAT
GCCTTTGAGTCCCTCTTTCAGAGTTTCGAGACTTGGCGCCGGGGAGATGCTCTTTCCCGCTTGGATACTT
TGGAAACAAACAAGAGGAAAGCCCTCCAGTTACTCACGAAGGATTCAGATAAAGTAAAGGAGTTTTTTGA
GAAGTTACAGCACACCTTGGATCAAAAGAAGAATGAAATCCTGTCTGACTTTGAAACTATGAAGCTTGCA
GTTATGCAAACCTATGACCCGGAGATCAACAAAATCAACACTATTTTACAGGAGCAGCGGATGGCCTTCA
ACATTGCTGAGGCTTTCAAAGATGTCTCAGAACCTATTATATTTTTGCAACAGATGCAAGAGTTCAGGGA
GAAAATCAAAGTAATCAAGGAAACTCCTTTGCCACACTCTAATTTGCCCACAAGCCCTTTAATGAAGAAC
TTTGATACCAGTCAGTGGGGAGACATTAAACTAGTTGATGTGGATAAACTGTCTTTGCCGCAAGACACAG
GTGTGTTCACTAGCAAGATTCCCTGGTACCCCTATCTGCTGCTCATGATGGTAGTTCTGCTGGGTCTCCT
CATATTCTTTGGCCCCACTGTATTCCTGGAATGGTCTCCACTTGATGAATTGGCAACTTGGAAAGACTAT
CTTTCAAGCTTCAATTCTTACCTGACTAAGTCTGCTGATTTTATAGAACAATCTGTTTTTTACTGGGAAC
AGATGACAGATGGGTTTTTCATTTTTGGTGAAAGAGTAAAAAATGTTAGTTTGGTGGCACTGAACAATGT
GGCAGAGTTTATATGCAAATACAAACTATTATAA

Translation (407 aa):
MELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGLLEGNVRNSLWRPSPFKCPTCRKETSATGVNSLQ
VNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCVTDMQLICGICATRGEHTKHVFSSIEDAYAREKN
AFESLFQSFETWRRGDALSRLDTLETNKRKALQLLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLA
VMQTYDPEINKINTILQEQRMAFNIAEAFKDVSEPIIFLQQMQEFREKIKVIKETPLPHSNLPTSPLMKN
FDTSQWGDIKLVDVDKLSLPQDTGVFTSKIPWYPYLLLMMVVLLGLLIFFGPTVFLEWSPLDELATWKDY
LSSFNSYLTKSADFIEQSVFYWEQMTDGFFIFGERVKNVSLVALNNVAEFICKYKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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