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Report for CCDS48580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48580.1 Public Mus musculus 10 Stox1 23 108 98 CCDS HistoryNCBI Gene:216021Re-query CCDS DB by CCDS ID:48580.1Re-query CCDS DB by GeneID:216021See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48580.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000133371.7 ENSMUSP00000114652.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133371.7Link to Ensembl Protein Viewer:ENSMUSP00000114652.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000133371Re-query CCDS DB by Protein ID:ENSMUSP00000114652
Original member Current member NCBI NM_001033260.2 NP_001028432.1 Accepted alive Link to Nucleotide Sequence:NM_001033260.2Link to Protein Sequence:NP_001028432.1Re-query CCDS DB by Nucleotide ID:NM_001033260Re-query CCDS DB by Protein ID:NP_001028432Link to BLAST:NP_001028432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028432.1 990 B2RQL2 990 100% 0 0

Chromosomal Locations for CCDS 48580.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 62659520 62659667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62663955 62666325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62667821 62667973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62725768 62726068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2973 nt):
ATGGCGCGGCCCGTGCAGCTGGCACCGGGTTCGCTGGCGTTGGTGCTGAGCCCGCGGGAGGCCGGGCAGG
CGGCGGGGGAGCCGGGCGGTCGCGCGCTCTTCCGCGCCTTCCGCCGCGCCAACGCGCGCTGCTTCTGGAA
CGCACGGCTGGCGCGCGCCGCCTCGCGGCTGGCCTTTCTCGGCTGGCTGCGGCGCGGGGTGCTGCTGGTG
CGCGCGCCCCAGCCCTGTGTGCAGGTGCTGCGGGATGCGTGGCGTCGCCGAGCCCTGCGGCCGCCCCGAG
GCTTCCGCATCACCGCGGTGGGTGATGTCTTCCCAGTGCAAATGAGTCCCATAGCCCAGTGCCGGTTTGT
GCCCTTGGCTGAAGTTCTCTGCTGTGCTATAGCTGATATGAACGCGGCTCAGGTGATGGTAACACAACAG
TCCCTCTTGGAGCACTTGATCAAACATTACCCAGGTATTGCTGTTCCCTCCCCAGACATTCTCTACAGCA
CACTGGGAGCTCTAATTCAAGAGAGGAAGATTTACCACACTGGAGAAGGCTACTTCATAGTTACCCCAAG
CACATACTTCATCACAAATACGCCAATGCAGGGAAATAAAAGTGCTCTCCTGTCAAACGAAGGGTGCTCA
GGGCCCACTTCTGGAACCTATCTGGTAAGTGTGGATTGCTGTGCAGAGCCGACCCAGGAGAATGAGGCTC
TCTTTTCCCACTGTCCTTCATGTCAGTGCTACCCTGATACAAGCATGTGCGACTCTAAGGACCTCCTGAC
TGCTGCAGAAGTGACTAGAAAAAGCCAGGAAGGTCTTGAGGAGACCACAGCTTTGACCGAGAATCAGGTA
GTTTCAGCCTCTGAAGATACCCACATCTGTGTGAACCCCAAACCATTACCATACACCAAAGACAAAGGCA
AAAGATTTGGTTTTGGTTTCTTGTGGCGCAGCTTATCTAGAAAAGAGAAGCCCAAAGCCGAGTACCACAG
TTTCTCAGCACAGTTCCCACCCGAAGAGTGGCCTGTCCGAGATGAGGACAGTTCCACCAAAATCCCCCGA
GATGTGGAACATGCGCTAATCAAAAGAATTAACCCTGTACTGACTGTTGACAACTTAACCAAGCACACTG
CCCTAATGCAAAAATATGAAGAACAGAAAAAATATAACAGCCAGGGCACGTCAATGGATATACTGACAAC
CAGGCATAAAGATTCCTCTAAAGAGGTAATTGGGAAAAGGCAGGGCCAATTCGCCAAGTCCCGCAGGCGG
GGCAGTTCTCATAAGGGTAGACACAAAGCACGGAGCCAGGGGAGTGAGCTTGAGCCAGGAAATCCTGGAC
AGGAAAAGGAAAAGCAGCCCAAGGTCCCTGCAGCCCAGCCCGCGCCCCGCACGAAAAGCCCCAGTGAGCA
AGTTCATCACTTGCAAGGCAGGAATCCAGCTGTGCTAGGCTCCCACTTGATATATAAAAAGCAGATCAAT
AATCCGTTCCAGGGCATGCATCTCCGAAAGCACTCAGTATCCAAAGGGCACGCCGTTCAGAAGACCCATG
GTCTGAAACCTACTTGCGTCGGGCCAGAGGAAAAGCCTTTCTGGAGCGCAGGCTCTTCAGATCCTTCCGG
AGTCTTTGATGGTGAAGCCCAACCGCCGTATCCGGAACAATGCCGTGATAAACTAGAAGCAGGAAGCACG
CAGGTGGCGAAGGCTCCTGTCCACCCAGTCAGCGACGATTTCAGAGGTGGCCCAGGAAATTATCCTCCAC
GTAGAGTTTTGCCAGGCCCCTCTCGGTGCTGTTCCTTTAGGGAAAGTATGCTGCGACCTGGTGTGTATCA
CGAGGAAAACAAGGACCTCCCTGAGGTCTTGCGGAAAAGTTGGTCCACCTGTGACATGTTCTTGGGGACC
AAGGAAAAGAAGCAGGCCCTGCCCGCACAACGTTGCTCTTTGGATCCAGACTCCTCCTCTGTGCACGCAG
AGGATAAGACAGTGGATAAGATACTCCACCAGTTCCAAAACCTCGGCCTCTTAGATTGCCCAGCTGGTGC
AAATCGTTTGAGGACTCATGAAAGACAAGATGGCAACTCAGAAGAACTAAGTAGAAAGGCATTACAAATC
CCTGAGGCGGAGATTGTGAATATGGAGAACGAAGGGCTTTCTGACAGTGAGCAGGACCAGGTGGCTTTGA
GTCACAGTGACCCTGGGGCTGGGGATGACGGGGGCTGCAGTTCTCTGTGTTTAGAGGACGATGACTTCTC
TGAGACAGATGATTTCTGTCCCTCGTTGCCGGGACACACTCAGCACTCCTTTGCAGGTGGAGGCACGTGG
AATCATTTGGGAACACCAGCCATGACAGGGAAGTCTCTGACCGACTGTAATAGCAAAGCCCATAGGCTTG
AGCTTCTGGCCATTGAAAGGAATCCTTGGTACAAGGCCACGGGGTTGTTTTCAAACGCAGGGGAAAGCCC
AAACCCTGATCTCTCTGACAACCCTGGTCAAAATTCAAGGATCCCATGGGGTTTCAACTACGAAGGCGAG
CCCACTGTTGCCCATGTCCAGACCCCAGCAGCTGCTGCTGGCAGAAGTTTACTTGCGTGTTCTACTGTAA
GGACAACCAGTTTCCCAGTTGAGATCCTGCAAGAGTCTCCTGGTGATAGGGGAAAGAGTCCAATTGTCTG
GAGACAGAGCCTTCCAAGTCAGGAAATGAAAGAGCATTTCACAGACAAGTTACAACTTGTCAAGACCTCA
CATGGGCCAGTGTCAGCCCAGGAGCCACAGGGAGAACACCTTGAAGGGACAGAGAATTACAGCATGACGG
GAGACAGTGGGATCGATTCCCCCAGGACGCAGAGCCTGGTATCTACTAATTCCGCCATTTTGGATGGATT
TAAAAGAAGACAGCATTTTCTGCCAAACCGTGAAGGTGTTCAGAAGAGCCAAAACCTTGCATCGAATTCC
TTGTTTCAACTAACCCCAGCTATAAATGTCTAA

Translation (990 aa):
MARPVQLAPGSLALVLSPREAGQAAGEPGGRALFRAFRRANARCFWNARLARAASRLAFLGWLRRGVLLV
RAPQPCVQVLRDAWRRRALRPPRGFRITAVGDVFPVQMSPIAQCRFVPLAEVLCCAIADMNAAQVMVTQQ
SLLEHLIKHYPGIAVPSPDILYSTLGALIQERKIYHTGEGYFIVTPSTYFITNTPMQGNKSALLSNEGCS
GPTSGTYLVSVDCCAEPTQENEALFSHCPSCQCYPDTSMCDSKDLLTAAEVTRKSQEGLEETTALTENQV
VSASEDTHICVNPKPLPYTKDKGKRFGFGFLWRSLSRKEKPKAEYHSFSAQFPPEEWPVRDEDSSTKIPR
DVEHALIKRINPVLTVDNLTKHTALMQKYEEQKKYNSQGTSMDILTTRHKDSSKEVIGKRQGQFAKSRRR
GSSHKGRHKARSQGSELEPGNPGQEKEKQPKVPAAQPAPRTKSPSEQVHHLQGRNPAVLGSHLIYKKQIN
NPFQGMHLRKHSVSKGHAVQKTHGLKPTCVGPEEKPFWSAGSSDPSGVFDGEAQPPYPEQCRDKLEAGST
QVAKAPVHPVSDDFRGGPGNYPPRRVLPGPSRCCSFRESMLRPGVYHEENKDLPEVLRKSWSTCDMFLGT
KEKKQALPAQRCSLDPDSSSVHAEDKTVDKILHQFQNLGLLDCPAGANRLRTHERQDGNSEELSRKALQI
PEAEIVNMENEGLSDSEQDQVALSHSDPGAGDDGGCSSLCLEDDDFSETDDFCPSLPGHTQHSFAGGGTW
NHLGTPAMTGKSLTDCNSKAHRLELLAIERNPWYKATGLFSNAGESPNPDLSDNPGQNSRIPWGFNYEGE
PTVAHVQTPAAAAGRSLLACSTVRTTSFPVEILQESPGDRGKSPIVWRQSLPSQEMKEHFTDKLQLVKTS
HGPVSAQEPQGEHLEGTENYSMTGDSGIDSPRTQSLVSTNSAILDGFKRRQHFLPNREGVQKSQNLASNS
LFQLTPAINV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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