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Report for CCDS11195.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11195.2 Public Homo sapiens 17 SMCR8 24 110 108 CCDS HistoryNCBI Gene:140775Re-query CCDS DB by CCDS ID:11195.2See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11195.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406438.5 ENSP00000385025.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000406438.5Link to Ensembl Protein Viewer:ENSP00000385025.3Re-query CCDS DB by Nucleotide ID:ENST00000406438Re-query CCDS DB by Protein ID:ENSP00000385025
Original member Current member NCBI NM_144775.3 NP_658988.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144775.3Link to Protein Sequence:NP_658988.2Re-query CCDS DB by Nucleotide ID:NM_144775Re-query CCDS DB by Protein ID:NP_658988Link to BLAST:NP_658988.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_658988.2 937 Q8TEV9-1 937 100% 0 0

Chromosomal Locations for CCDS 11195.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 18315790 18318149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18322617 18323070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2814 nt):
ATGATCAGCGCCCCTGACGTAGTGGCCTTCACCAAAGAGGAAGAGTATGAAGAAGAGCCTTACAATGAGC
CGGCCCTGCCTGAGGAGTACTCGGTGCCGCTCTTCCCCTTCGCCAGTCAGGGTGCTAACCCCTGGTCAAA
ACTGTCCGGGGCCAAGTTTTCGAGGGACTTCATTCTTATTTCCGAGTTCTCTGAGCAGGTGGGACCCCAA
CCCTTACTGACCATCCCCAATGACACCAAAGTTTTTGGCACTTTTGATCTCAATTACTTCTCCCTGCGTA
TCATGTCTGTGGATTACCAGGCTTCCTTCGTGGGCCATCCTCCTGGATCTGCCTACCCCAAGCTGAACTT
CGTGGAGGACTCCAAGGTGGTGCTGGGAGATTCTAAGGAGGGCGCCTTTGCATACGTGCACCACCTTACC
CTATACGACCTGGAGGCCCGTGGCTTCGTGAGGCCGTTTTGCATGGCTTATATCTCTGCAGACCAGCATA
AAATCATGCAGCAGTTCCAGGAGCTTTCAGCCGAATTTTCCAGAGCTTCTGAGTGCTTGAAGACTGGCAA
CAGGAAGGCATTTGCTGGGGAACTTGAAAAAAAGCTGAAAGACTTGGATTACACCAGGACAGTGCTACAC
ACAGAAACGGAGATCCAGAAGAAAGCCAACGACAAAGGCTTTTACTCATCTCAGGCAATTGAGAAAGCCA
ATGAACTGGCCAGTGTGGAGAAGTCCATCATTGAACATCAAGACCTGCTGAAGCAGATCCGCTCATACCC
TCATCGGAAGTTGAAGGGGCATGATTTGTGTCCTGGTGAGATGGAGCACATCCAGGATCAGGCCAGCCAG
GCATCCACTACCTCTAACCCTGATGAGTCTGCCGACACAGACCTTTACACCTGCAGACCAGCCTACACCC
CAAAACTTATCAAAGCAAAGTCCACCAAGTGTTTTGACAAGAAGTTGAAGACCTTGGAGGAGCTCTGTGA
CACTGAATATTTCACCCAGACCCTGGCTCAGCTCAGCCACATTGAACACATGTTCAGAGGAGACCTGTGT
TACCTCCTGACCAGTCAGATTGATAGAGCACTTCTAAAACAACAGCATATAACAAACTTTCTCTTTGAAG
ACTTTGTGGAGGTCGATGACAGGATGGTGGAGAAACAAGAAAGCATACCCTCTAAGCCCAGTCAAGACAG
GCCGCCTTCCAGTTCTCTAGAAGAATGCCCAATTCCTAAAGTGTTAATTAGTGTTGGTTCTTACAAGTCC
AGTGTGGAGTCTGTGTTGATCAAGATGGAGCAGGAACTGGGAGATGAGGAGTACAAGGAAGTGGAAGTGA
CTGAGTTGAGCAGTTTCGACCCCCAGGAAAACTTGGACTACCTGGATATGGATATGAAAGGGAGTATCAG
CAGTGGTGAAAGTATTGAAGTTTTGGGCACGGAGAAATCCACCTCCGTGCTTTCTAAATCTGACAGCCAG
GCAAGCCTCACAGTACCATTGAGCCCCCAGGTGGTCCGGAGCAAAGCAGTCAGCCACAGGACCATCAGCG
AGGACAGTATTGAAGTCCTCAGTACCTGCCCCTCTGAGGCCCTCATCCCTGATGACTTTAAGGCCAGCTA
CCCAAGTGCCATTAATGAAGAAGAATCATATCCAGATGGCAATGAAGGAGCCATCCGCTTCCAGGCAAGC
ATCAGTCCTCCAGAACTGGGTGAGACAGAGGAAGGCAGCATAGAAAACACCCCATCACAAATAGACTCCT
CCTGCTGTATTGGGAAGGAGAGCGATGGTCAGTTGGTGCTGCCCTCCACTCCAGCCCACACACACTCTGA
CGAGGATGGGGTGGTGAGCAGCCCCCCACAGCGCCACAGGCAGAAGGACCAGGGGTTCCGTGTAGACTTT
TCAGTGGAAAATGCCAACCCTTCTTCCCGAGACAACAGTTGTGAAGGGTTTCCCGCTTATGAGCTGGACC
CGAGCCACCTGCTGGCTAGCCGGGACATCAGTAAGACCAGCCTGGACAACTACTCAGACACCACCAGCTA
CGTGAGCAGTGTAGCGTCCACCAGCTCAGACAGGATCCCCTCTGCTTATCCTGCTGGCCTGTCTTCCGAT
AGGCATAAAAAGAGGGCTGGCCAGAACGCCTTAAAATTCATCCGCCAGTACCCCTTTGCCCACCCAGCCA
TCTACTCCCTGCTCAGTGGGAGGACACTTGTGGTCCTGGGGGAAGATGAGGCCATAGTCAGGAAACTCGT
GACTGCACTGGCTATCTTTGTCCCCAGCTATGGCTGCTACGCTAAGCCCGTGAAACATTGGGCCTCCTCC
CCTTTGCACATTATGGATTTTCAGAAGTGGAAGCTTATTGGCTTGCAGAGAGTGGCCTCCCCTGCCGGTG
CCGGTACCCTCCATGCCCTGAGCCGCTACAGCCGCTACACGAGCATCCTGGACCTTGACAACAAAACCCT
GCGCTGCCCCCTTTACAGAGGCACCCTGGTGCCCCGCCTGGCAGACCACCGCACACAGATCAAGCGGGGC
AGCACCTACTACCTGCATGTCCAGAGCATGCTCACCCAGCTCTGCTCCAAGGCCTTCCTCTACACCTTCT
GCCACCACCTGCACCTGCCTACCCACGACAAGGAGACAGAGGAGCTGGTAGCCAGCCGCCAGATGAGCTT
CCTAAAGCTGACCCTGGGTCTGGTGAATGAGGATGTTAGGGTGGTCCAGTACCTGGCTGAGCTGCTGAAG
CTGCACTACATGCAGGAATCTCCAGGGACCAGCCACCCCATGCTCAGGTTTGACTATGTCCCCAGCTTTT
TGTATAAAATCTGA

Translation (937 aa):
MISAPDVVAFTKEEEYEEEPYNEPALPEEYSVPLFPFASQGANPWSKLSGAKFSRDFILISEFSEQVGPQ
PLLTIPNDTKVFGTFDLNYFSLRIMSVDYQASFVGHPPGSAYPKLNFVEDSKVVLGDSKEGAFAYVHHLT
LYDLEARGFVRPFCMAYISADQHKIMQQFQELSAEFSRASECLKTGNRKAFAGELEKKLKDLDYTRTVLH
TETEIQKKANDKGFYSSQAIEKANELASVEKSIIEHQDLLKQIRSYPHRKLKGHDLCPGEMEHIQDQASQ
ASTTSNPDESADTDLYTCRPAYTPKLIKAKSTKCFDKKLKTLEELCDTEYFTQTLAQLSHIEHMFRGDLC
YLLTSQIDRALLKQQHITNFLFEDFVEVDDRMVEKQESIPSKPSQDRPPSSSLEECPIPKVLISVGSYKS
SVESVLIKMEQELGDEEYKEVEVTELSSFDPQENLDYLDMDMKGSISSGESIEVLGTEKSTSVLSKSDSQ
ASLTVPLSPQVVRSKAVSHRTISEDSIEVLSTCPSEALIPDDFKASYPSAINEEESYPDGNEGAIRFQAS
ISPPELGETEEGSIENTPSQIDSSCCIGKESDGQLVLPSTPAHTHSDEDGVVSSPPQRHRQKDQGFRVDF
SVENANPSSRDNSCEGFPAYELDPSHLLASRDISKTSLDNYSDTTSYVSSVASTSSDRIPSAYPAGLSSD
RHKKRAGQNALKFIRQYPFAHPAIYSLLSGRTLVVLGEDEAIVRKLVTALAIFVPSYGCYAKPVKHWASS
PLHIMDFQKWKLIGLQRVASPAGAGTLHALSRYSRYTSILDLDNKTLRCPLYRGTLVPRLADHRTQIKRG
STYYLHVQSMLTQLCSKAFLYTFCHHLHLPTHDKETEELVASRQMSFLKLTLGLVNEDVRVVQYLAELLK
LHYMQESPGTSHPMLRFDYVPSFLYKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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