NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23908.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23908.1 Public Mus musculus 10 Cdk1 23 108 98 CCDS HistoryNCBI Gene:12534Re-query CCDS DB by CCDS ID:23908.1Re-query CCDS DB by GeneID:12534See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23908.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020099.12 ENSMUSP00000020099.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020099.12Link to Ensembl Protein Viewer:ENSMUSP00000020099.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020099Re-query CCDS DB by Protein ID:ENSMUSP00000020099
Original member Current member EBI ENSMUST00000119827.7 ENSMUSP00000113184.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119827.7Link to Ensembl Protein Viewer:ENSMUSP00000113184.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119827Re-query CCDS DB by Protein ID:ENSMUSP00000113184
Original member Current member NCBI NM_007659.4 NP_031685.2 Accepted alive Link to Nucleotide Sequence:NM_007659.4Link to Protein Sequence:NP_031685.2Re-query CCDS DB by Nucleotide ID:NM_007659Re-query CCDS DB by Protein ID:NP_031685Link to BLAST:NP_031685.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031685.2 297 P11440 297 100% 0 0

Chromosomal Locations for CCDS 23908.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 69338498 69338596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69340481 69340622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69340715 69340878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69342540 69342710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69345061 69345184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69346075 69346231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69350096 69350132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGAAGACTATATCAAAATAGAGAAAATTGGAGAAGGTACTTACGGTGTGGTGTATAAGGGTAGACACA
GAGTCACTGGCCAGATAGTGGCCATGAAGAAGATCAGACTTGAAAGCGAGGAAGAAGGAGTGCCCAGTAC
TGCAATTCGGGAAATCTCTCTATTAAAAGAACTTCGACATCCAAATATAGTCAGCCTGCAGGATGTGCTC
ATGCAGGACTCCAGGCTGTATCTCATCTTTGAGTTCCTGTCCATGGACCTCAAGAAGTACCTGGACTCCA
TCCCTCCTGGGCAGTTCATGGATTCTTCACTCGTTAAGAGTTACTTACACCAAATCCTCCAGGGAATTGT
GTTTTGCCACTCCCGGCGAGTTCTTCACAGAGACTTGAAACCTCAAAATCTATTGATTGATGACAAAGGA
ACAATCAAACTGGCTGATTTCGGCCTTGCCAGAGCGTTTGGAATACCGATACGAGTGTACACACACGAGG
TAGTGACGCTGTGGTACCGATCTCCAGAAGTGTTGCTGGGCTCGGCTCGTTACTCCACTCCGGTTGACAT
CTGGAGTATAGGGACCATATTTGCAGAACTGGCCACCAAGAAGCCGCTTTTCCACGGCGACTCAGAGATT
GACCAGCTCTTCAGGATCTTCAGAGCTCTGGGCACTCCTAACAACGAAGTGTGGCCAGAAGTCGAGTCCC
TGCAGGACTACAAGAACACCTTTCCCAAGTGGAAGCCGGGGAGCCTCGCATCCCACGTCAAGAACCTGGA
CGAGAACGGCTTGGATTTGCTCTCAAAAATGCTAGTCTATGATCCTGCCAAACGAATCTCTGGCAAAATG
GCCCTGAAGCACCCGTACTTTGATGACTTGGACAATCAGATTAAGAAGATGTAG

Translation (297 aa):
MEDYIKIEKIGEGTYGVVYKGRHRVTGQIVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVL
MQDSRLYLIFEFLSMDLKKYLDSIPPGQFMDSSLVKSYLHQILQGIVFCHSRRVLHRDLKPQNLLIDDKG
TIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSEI
DQLFRIFRALGTPNNEVWPEVESLQDYKNTFPKWKPGSLASHVKNLDENGLDLLSKMLVYDPAKRISGKM
ALKHPYFDDLDNQIKKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH