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Report for CCDS13549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13549.1 Public Homo sapiens 20 SAMD10 24 110 108 CCDS HistoryNCBI Gene:140700Re-query CCDS DB by CCDS ID:13549.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13549.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369886.8 ENSP00000358902.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369886.8Link to Ensembl Protein Viewer:ENSP00000358902.3Re-query CCDS DB by Nucleotide ID:ENST00000369886Re-query CCDS DB by Protein ID:ENSP00000358902
Original member Current member NCBI NM_080621.5 NP_542188.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080621.5Link to Protein Sequence:NP_542188.1Re-query CCDS DB by Nucleotide ID:NM_080621Re-query CCDS DB by Protein ID:NP_542188Link to BLAST:NP_542188.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542188.1 202 Q9BYL1 202 100% 0 0

Chromosomal Locations for CCDS 13549.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 63975510 63975532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63975692 63975832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63976971 63977142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63977225 63977406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63979377 63979467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGTTCACCGAGCTGAGGTCCAAGCTGAGCCCCCCGCGTGGCCGCGCCGGGGCCGTGCGCGCGGGCTTCG
GGGAGCGCCGGGATGTGGACGCCACTGCCCACTTCAGCTTCTGCCGGACCCTCCTGGAGCACACGGTGTC
AGCTGAGAGCATCCCCTGCCACTTGCCTCGGACACCTGGCACCAGCCTCACGTGGCATGACTCCCGCAGC
CAGAGGGCGGCCAGCAGCAGGCCAATCAAGCTCCTGCAGCAGCCCGGCACAGACACCCCCCAGGGCCGGC
TGTACTCTGACCACTATGGCCTGTACCATACAAGCCCCTCGCTGGGTGGCCTGACCCGGCCCGTGGTCCT
GTGGAGTCAGCAGGACGTCTGCAAGTGGCTCAAGAAGCACTGTCCCCACAACTACCTCGTCTACGTGGAG
GCCTTCTCCCAGCATGCCATCACCGGCCGGGCACTGCTGCGGCTGAATGCGGAGAAGCTGCAGCGGATGG
GGCTGGCCCAGGAGGCCCAGAGGCAGGAGGTGCTGCAGCAGGTGCTCCGCCTGCAGGTGCGTGAGGAGGG
GCGGAGCCTGCAGCTGCTCAGCCAAGCTTCCTTCGGGAAAATGTCCTAG

Translation (202 aa):
MFTELRSKLSPPRGRAGAVRAGFGERRDVDATAHFSFCRTLLEHTVSAESIPCHLPRTPGTSLTWHDSRS
QRAASSRPIKLLQQPGTDTPQGRLYSDHYGLYHTSPSLGGLTRPVVLWSQQDVCKWLKKHCPHNYLVYVE
AFSQHAITGRALLRLNAEKLQRMGLAQEAQRQEVLQQVLRLQVREEGRSLQLLSQASFGKMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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