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Report for CCDS43003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43003.1 Public Homo sapiens 22 SELENOM 24 110 108 CCDS HistoryNCBI Gene:140606Re-query CCDS DB by CCDS ID:43003.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 43003.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400299.6 ENSP00000383155.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400299.6Link to Ensembl Protein Viewer:ENSP00000383155.2Re-query CCDS DB by Nucleotide ID:ENST00000400299Re-query CCDS DB by Protein ID:ENSP00000383155
Original member Current member EBI ENST00000402395.5 ENSP00000384564.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402395.5Link to Ensembl Protein Viewer:ENSP00000384564.1Re-query CCDS DB by Nucleotide ID:ENST00000402395Re-query CCDS DB by Protein ID:ENSP00000384564
Original member Current member NCBI NM_080430.4 NP_536355.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080430.4Link to Protein Sequence:NP_536355.1Re-query CCDS DB by Nucleotide ID:NM_080430Re-query CCDS DB by Protein ID:NP_536355Link to BLAST:NP_536355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536355.1 145 Q8WWX9 145 100% 0 0

Chromosomal Locations for CCDS 43003.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 31104970 31105128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31105208 31105286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31105658 31105692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31105930 31105965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31107377 31107505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 48

Nucleotide Sequence (438 nt):
ATGAGCCTCCTGTTGCCTCCGCTGGCGCTGCTGCTGCTTCTCGCGGCGCTTGTGGCCCCAGCCACAGCCG
CCACTGCCTACCGGCCGGACTGGAACCGTCTGAGCGGCCTAACCCGCGCCCGGGTAGAGACCTGCGGGGG
ATGACAGCTGAACCGCCTAAAGGAGGTGAAGGCTTTCGTCACGCAGGACATTCCATTCTATCACAACCTG
GTGATGAAACACCTCCCTGGGGCCGACCCTGAGCTCGTGCTGCTGGGCCGCCGCTACGAGGAACTAGAGC
GCATCCCACTCAGTGAAATGACCCGCGAAGAGATCAATGCGCTAGTGCAGGAGCTCGGCTTCTACCGCAA
GGCGGCGCCCGACGCGCAGGTGCCCCCCGAGTACGTGTGGGCGCCCGCGAAGCCCCCAGAGGAAACTTCG
GACCACGCTGACCTGTAG

Translation (145 aa):
MSLLLPPLALLLLLAALVAPATAATAYRPDWNRLSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFYHNL
VMKHLPGADPELVLLGRRYEELERIPLSEMTREEINALVQELGFYRKAAPDAQVPPEYVWAPAKPPEETS
DHADL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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