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Report for CCDS84380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84380.1 Public Mus musculus 18 Kcnn2 23 108 98 CCDS HistoryNCBI Gene:140492Re-query CCDS DB by CCDS ID:84380.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000183850.7 ENSMUSP00000139350.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183850.7Link to Ensembl Protein Viewer:ENSMUSP00000139350.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000183850Re-query CCDS DB by Protein ID:ENSMUSP00000139350
Original member Current member EBI ENSMUST00000211323.2 ENSMUSP00000148153.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211323.2Link to Ensembl Protein Viewer:ENSMUSP00000148153.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211323Re-query CCDS DB by Protein ID:ENSMUSP00000148153
Original member Current member NCBI NM_080465.2 NP_536713.1 Accepted alive Link to Nucleotide Sequence:NM_080465.2Link to Protein Sequence:NP_536713.1Re-query CCDS DB by Nucleotide ID:NM_080465Re-query CCDS DB by Protein ID:NP_536713Link to BLAST:NP_536713.1

Chromosomal Locations for CCDS 84380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 45560154 45560624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45561221 45561316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45592006 45592424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45655198 45655339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45670218 45670328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45676937 45677064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45683071 45683140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45685275 45685562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGAGCAGCTGCAGGTACAACGGGGGCGTCATGCGTCCGCTCAGCAACTTGAGCTCGTCCCGCCGGAACC
TGCAGGAGATGGACTCCGAGGCTCAGCCCCTGCAGCCCCCCGCGTCCGTCGTAGGAGGAGGTGGTGGTGC
GTCCTCCCCGTCTGCTGCCGCCGCCGCCTCATCCTCAGCCCCGGAGATCGTGGTGTCTAAGCCGGAGCAC
AACAATTCTAACAACCTGGCGCTCTACGGGACTGGCGGCGGAGGCAGCACCGGAGGCGGCGGCGGCGGCA
GCGGGCATGGCAGCAGCAGCGGCACCAAGTCCAGCAAAAAGAAGAACCAGAACATCGGCTACAAGCTGGG
CCATCGGCGCGCCCTGTTTGAGAAGCGCAAGCGGCTCAGCGACTATGCGCTTATCTTCGGCATGTTCGGC
ATCGTGGTTATGGTCATTGAGACCGAGCTGTCTTGGGGCGCCTACGACAAGGCGTCGCTGTATTCTTTAG
CTCTGAAATGCCTTATCAGTCTCTCCACGATCATCCTGCTTGGTCTGATCATCGTGTACCACGCCAGGGA
AATACAGTTATTCATGGTGGACAATGGAGCAGATGACTGGAGAATAGCCATGACTTATGAGCGTATTTTC
TTCATCTGCTTGGAAATACTGGTGTGTGCTATCCATCCCATACCTGGGAATTATACGTTCACATGGACAG
CCCGGCTTGCCTTCTCCTATGCCCCCTCCACAACCACCGCAGATGTGGATATTATTTTATCTATACCAAT
GTTCTTAAGGCTCTATCTGATTGCCAGAGTCATGCTATTACATAGCAAACTTTTCACCGATGCCTCGTCT
AGAAGCATTGGGGCACTTAATAAGATAAACTTCAATACGCGTTTTGTTATGAAGACTTTAATGACTATCT
GCCCAGGAACTGTGCTCTTGGTTTTTAGTATCTCATTATGGATAATTGCCGCATGGACTGTCCGAGCTTG
TGAAAGGTACCATGATCAACAGGATGTCACTAGCAACTTCCTTGGAGCAATGTGGTTGATATCAATAACT
TTTCTCTCCATTGGTTATGGTGACATGGTACCCAACACATACTGTGGGAAAGGAGTCTGCTTGCTTACTG
GAATCATGGGTGCAGGTTGCACAGCCCTGGTGGTAGCCGTAGTGGCAAGAAAGCTAGAACTTACCAAAGC
AGAAAAGCATGTGCACAATTTCATGATGGATACTCAGCTGACCAAAAGAGTGAAAAACGCAGCCGCCAAT
GTACTCAGGGAAACGTGGTTAATCTACAAAAACACAAAGCTAGTGAAAAAGATCGACCACGCAAAAGTAA
GAAAGCATCAACGGAAATTCTTGCAAGCTATTCATCAATTAAGAAGTGTGAAGATGGAACAGAGGAAACT
GAATGACCAAGCAAATACCCTAGTGGATCTGGCAAAGACCCAGAATATCATGTATGACATGATTTCCGAC
TTGAATGAAAGGAGTGAAGACTTTGAGAAAAGGATCGTCACCCTGGAAACAAAACTAGAGACTTTGATTG
GTAGCATTCATGCCCTCCCTGGGCTAATCAGCCAGACCATCAGACAGCAGCAAAGGGACTTCATTGAGAC
ACAGATGGAGAACTACGACAAGCATGTCTCCTACAATGCTGAGCGCTCCCGGTCCTCGTCCAGGAGGCGG
CGGTCCTCCTCCACAGCGCCACCAACTTCATCAGAGAGTAGCTAG

Translation (574 aa):
MSSCRYNGGVMRPLSNLSSSRRNLQEMDSEAQPLQPPASVVGGGGGASSPSAAAAASSSAPEIVVSKPEH
NNSNNLALYGTGGGGSTGGGGGGSGHGSSSGTKSSKKKNQNIGYKLGHRRALFEKRKRLSDYALIFGMFG
IVVMVIETELSWGAYDKASLYSLALKCLISLSTIILLGLIIVYHAREIQLFMVDNGADDWRIAMTYERIF
FICLEILVCAIHPIPGNYTFTWTARLAFSYAPSTTTADVDIILSIPMFLRLYLIARVMLLHSKLFTDASS
RSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISLWIIAAWTVRACERYHDQQDVTSNFLGAMWLISIT
FLSIGYGDMVPNTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAAN
VLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLNDQANTLVDLAKTQNIMYDMISD
LNERSEDFEKRIVTLETKLETLIGSIHALPGLISQTIRQQQRDFIETQMENYDKHVSYNAERSRSSSRRR
RSSSTAPPTSSESS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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