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Report for CCDS39485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39485.1 Public Mus musculus 6 Igf2bp3 23 108 98 CCDS HistoryNCBI Gene:140488Re-query CCDS DB by CCDS ID:39485.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39485.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031838.8 ENSMUSP00000031838.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031838.8Link to Ensembl Protein Viewer:ENSMUSP00000031838.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031838Re-query CCDS DB by Protein ID:ENSMUSP00000031838
Original member Current member NCBI NM_023670.3 NP_076159.3 Accepted alive Link to Nucleotide Sequence:NM_023670.3Link to Protein Sequence:NP_076159.3Re-query CCDS DB by Nucleotide ID:NM_023670Re-query CCDS DB by Protein ID:NP_076159Link to BLAST:NP_076159.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076159.3 579 Q9CPN8 579 100% 0 0

Chromosomal Locations for CCDS 39485.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49087342 49087440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49087768 49087881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49088430 49088561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49090976 49091050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49094140 49094256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49104174 49104299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49105570 49105705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49107342 49107464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49108926 49109060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49117152 49117433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49134695 49134758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49134847 49134898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49168470 49168518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49213267 49213327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49214297 49214471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGAACAAATTGTACATCGGGAACCTCAGCGACCACGCCGGCCCCGCGGACCTGGAAAGTGTCTTCAAGG
ACGCTAAGATCCCGGTGGCGGGCCCCTTCCTGGTGAAGACGGGCTACGCGTTCGTGGACTGCCCGGACGA
GGGCTGGGCCCTCAAGGCCATCGAGGCGCTTTCAGGTAAAATGGAACTACATGGGAAACCGATGGAAGTT
GAGCACTCGGTCCCTAAACGGCAGAGGATTCGTAAACTTCAGATACGAAATATCCCGCCCCACTTACAAT
GGGAGGTGCTGGATAGTTTACTAGTCCAGTATGGAGTGGTGGAGAGCTGTGAGCAAGTGAACACGGATTC
GGAAACGGCAGTTGTAAATGTAACCTATTCCAGTAAGGACCAAGCTAGACAAGCCTTAGACAAACTGAAT
GGATTCCAGTTAGAGAACTTCACCTTGAAGGTTGCCTACATCCCAGATGAAACTGCTGCCCAGCAAAATC
CCTCGCCACAGCTCCGGGGGCGCCGGGGGCCAGGGCAGCGGGGCTCATCCAGGCAGGCGTCTCCAGGATC
GGTGTCCAAGCAGAAACCCTGTGACCTGCCACTGCGCCTGCTGGTTCCCACCCAGTTTGTTGGAGCCATT
ATAGGAAAAGAAGGTGCTACCATTCGCAACATCACAAAGCAGACCCAGTCTAAAATCGATGTCCATCGTA
AGGAGAATACAGGGGCCGCGGAGAAGTCCATTACTATCCTCTCTACCCCTGAAGGCACCTCTGCAGCTTG
TAAGTCTATTCTGGAGATTATGCATAAGGAAGCTCAAGATATAAAATTCACAGAGGAGATTCCCTTGAAG
ATCTTAGCTCACAATAACTTTGTAGGCCGTCTCATTGGTAAAGAAGGAAGAAACCTTAAAAAAATCGAGC
AAGACACGGACACTAAAATCACAATATCTCCATTGCAGGAACTGACGCTGTACAATCCGGAACGCACCAT
TACAGTGAAAGGCAGTGTTGAGACGTGTGCCAAGGCGGAGGAGGAAATAATGAAGAAGATCAGGGAGTCT
TATGAAAATGATATTGCTTCCATGAATCTTCAAGCACATTTAATCCCTGGATTAAATCTGAATGCCTTGG
GTCTGTTCCCACCCACGTCAGGGATGCCACCTCCCACCTCAGGGCCCCCTTCAACCCTGACTCCTCCCTA
CCCACAATTTGAGCAATCAGAGACGGAGACTGTGCATCTGTTTATTCCCGCCCTGTCCGTTGGCGCCATC
ATTGGCAAGCAGGGCCAACACATCAAACAGCTTTCTCGCTTTGCGGGAGCTTCGATTAAGATCGCTCCAG
CCGAAGCACCAGATGCTAAAGTGCGGATGGTGATTATCACTGGACCACCAGAGGCTCAGTTCAAGGCTCA
GGGAAGAATTTATGGAAAAATTAAAGAAGAAAACTTTGTTAGTCCTAAAGAAGAGGTGAAACTTGAAGCT
CACATCAGAGTGCCGTCCTTTGCTGCTGGCAGAGTTATTGGGAAAGGAGGCAAAACGGTGAATGAGCTCC
AGAGTTTATCAAGTGCTGAAGTTGTCGTCCCCCGTGACCAGACACCTGATGAGAATGATCAAGTAGTTGT
CAAAATAACTGGCCACTTCTATGCTTGCCAGGTTGCCCAGAGGAAAATTCAGGAAATTCTGACTCAGGTA
AAGCAGCACCAGCAGCAGAAAGCTCTGCAGAGTGGACCACCTCAGTCAAGGCGGAAGTAA

Translation (579 aa):
MNKLYIGNLSDHAGPADLESVFKDAKIPVAGPFLVKTGYAFVDCPDEGWALKAIEALSGKMELHGKPMEV
EHSVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLN
GFQLENFTLKVAYIPDETAAQQNPSPQLRGRRGPGQRGSSRQASPGSVSKQKPCDLPLRLLVPTQFVGAI
IGKEGATIRNITKQTQSKIDVHRKENTGAAEKSITILSTPEGTSAACKSILEIMHKEAQDIKFTEEIPLK
ILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGSVETCAKAEEEIMKKIRES
YENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSTLTPPYPQFEQSETETVHLFIPALSVGAI
IGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKAQGRIYGKIKEENFVSPKEEVKLEA
HIRVPSFAAGRVIGKGGKTVNELQSLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQV
KQHQQQKALQSGPPQSRRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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