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Report for CCDS55478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55478.1 Public Homo sapiens X RBMXL3 24 110 108 CCDS HistoryNCBI Gene:139804Re-query CCDS DB by CCDS ID:55478.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55478.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424776.5 ENSP00000417451.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000424776.5Link to Ensembl Protein Viewer:ENSP00000417451.3Re-query CCDS DB by Nucleotide ID:ENST00000424776Re-query CCDS DB by Protein ID:ENSP00000417451
Original member Current member NCBI NM_001145346.2 NP_001138818.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145346.2Link to Protein Sequence:NP_001138818.1Re-query CCDS DB by Nucleotide ID:NM_001145346Re-query CCDS DB by Protein ID:NP_001138818Link to BLAST:NP_001138818.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138818.1 1067 Q8N7X1 1067 100% 0 0

Chromosomal Locations for CCDS 55478.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 115189442 115192645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3204 nt):
ATGATGGAAGCGGATCGCCCAGAGAAGCTTTTCATTGGGGGCCTCAACCTCAAAACCGACGAGAAAGCCC
TCAAAGCCGAGTTTGGCAAGTATGGCCACATCATCAAGGTGTTCCTGATGAAAGACCGAAAAACCAACAA
GTCGAGGGGCTTCGCGTTCGTCACCTTCGAAAGCCCTGCAGACGCCAAGGCTGCCGCCAGAGATATGAAC
GGCAAGTACCTGGATGGTAAGGCCATCATGGTGGCCCAGACCATCAAACCGGCATTCAAGAGCAGCCGAT
GGGTCCCGCCAACCCCCGGCAGCGGCAGTCGCTCAAGGTTCTCACACAGAACCCGTGGGGGTGGCAGCAG
CCCACAGCGACCCCCCTCTCAGGGCAGGCCTGATGACGGCCGCGGCTACGCGGGGTATTTCGACCTGTGG
CCCTACAGGGCCCCGATGCCCAGGAAGCGCGGGCCGCCACCGCGGCACTGGGCCAGCCCACCCCACAAGA
GGGCCACGCCGTCGAGCCTGGCTCACAGCGTTGGCTGTGGAATGCGCGGGAAGGCACCGACTGTGTCGGG
GCAAGATGGCTACTCAGGCTTGCAGCCACGGCGCTGGGCCGGCCCACCCCACAAGAGGGCTGTGCCCCGG
TCAAGCCTGGCTCGCATTGGCGGCAGTGGAATGCCTGGGAAGGCCCCGGCCGTGTGGGGGCAAGATGGCT
ACTCAGGCCCGCGGGTCCGGGAGCCACTGCCCCCGTGCCGCGACCCTGGGGATTTTGTCCCTGCGCTCAG
AGACTACAGCCGCCGCTATTATGGCCACTCCAGTGTCCCGGACTACCGTCCCTTGAGAGGCGACGGCAAC
CAAAATGGCTACAGGGGTCGCGACCATGAGTACACAGATCATCCCAGCAAAGGCTCCTACCGAGAGCCCC
TCAAGAGCTACGGAGGCCCATGCGGCGCTGCCCCTGTGTGGGGGACACCGCCATCTTATGGAGGAGGATG
CCGCTACGAGGAGTACCAGGGCAACTCGCCCGATGCCTGCAGTGAAGGCCGCTCGTCCGAGGCCTTGCCA
GTCGTCTTGCCAGACGCCTACAGCAGGGACCACTCGCCCAAAGCCTATAGTGGGGGCCGCAGCAGTTCCA
GTAACGGTTACAGCCGGAGTGACCGCTACGGAGAAGAAGGCTGCTACGAGGAGTACAGAGGCCGCTCGCC
CGACGCCCACAGCGGGGGCCGCAACAGTTCCAGCAACAGTTACGGCCAGAGCCACCACTATGGAGGAGAA
GGCCGCTATGAGGAGTACCGAGGCCGCTCACACGAGGCCCGCAGCGGGGGCCGCTCCACTGATGCCCACA
GCAGGGGCCGGTCCGACGACGCCTACAGTGGGGGCCATGACAGTTCCAGCTGGAGCGACTGCTGCGGAGG
AGGAGGCCGTTATGAGGAGTACCAAGGCCGCTCGCTGGATGCCAACAGTGGAGGCTGCTCGCCCGAGGCC
TACAGTGGGGGCCACGACAATTCCAGCTGGAGCGACCGCTACGGAGTAGGAGGCCACTATGAGGAGAACC
GAGGCCACTCTCTGGATGCCAACAGCGGAGGCCGTTCACCCGACACCCACAGTGGGGGCCACAGCAGTTC
CAGCAACAGTTACGGCCAGAGCCACCGCTATGGAGGAGAAGGCCGCTATGAGTACCGAGGCCGCTCGCAT
GACGCCCACAGTGGGGGCTGCTCTGCCGACGCCTACAGTGGGGGCCACGACAGTTCCAGCCAGAGCAACC
GCTACGGAGGAGGAGGCTGCTACGAGGAGTACCGAGGCCGCTCCCTCGATGCCAACAGTGGAGGCCGCTC
GCCCAATGCCTACAGCGGGGGCCACGACAGTTCCAGCTGGAGCCACCGCTACGGAGGAGGAGGCCGCTAC
GAGGAGTACCGAGGCCGCTCCCTTGATGCCAACAGTGGAGGCCGCTCGCCTGATGCCTACAGTGGGGGCC
ACGACAGTTCTGGCCAGAGCAACTGCTACGGAGGAGGAGGCCGCTACGAGGAGTACCGAGGCCGCTTGCT
CGATGCCAACAGTGGAGGCCGCTCGCCTGATGCCTACAGTGGGGGCCACGACAGTTCCAGCCAGAGCAAC
CGCTATGGAGGAGGCGGCCGCTACGAGGAGTACCGAGGCCACTCGCTTGATGCCAACAGCGGAGGCCGCT
CGCCTGACACCTACAGCCGGGGCCACGACAGTTCCAGCCAGAGCGACCACTATGGAGGAGGAGGTCGCTC
ACTCGATGCCAACAGCAGTGGCCGCTTGCCTGACGCCTACAGTGGGGGCCATGACAGTTCCAGCCGGAGC
CACCGCTACGGAGGAGGAGGCCGCTACGAGGAGTACCGAGGCCGCTCGCTCGATGCCAACAGCGGAGGCC
GCTCACCCAATGCCTACAGCGGGGGCCACAACAGTTCCAGCCGGAACGACCCCTGCAGAGGAGGAGGCCG
CTACGAGGAGAACCGAGGTCACTCTCTCGATGCCAACAGCGGAGGCCACTCACCCAACGCCTACAGTGGG
GGCCGTGACAGTTCCAGCAACAGTTACGACCGGAGCCACCGCTATGGAGGAGGAGGCCACTACGAAGAGT
ACCGAGGCCGCTCGCACGACACCCACAGCAGGGGCCGATCGCCCGATGCCCACAGCGGGGACCACTACAC
CGAAGCCTACAGCAGGGGCCGCGACAGTTTCAGCAACAGCTATGGCCGGAGTGACCATTACGGAAGAGGA
GGCTGCTACGAGGAATACCAAGGCCGCTCGCCCAATGCCTACGGCGGGGGCCGCGGCCTCAACAGTTCCA
ACAACAGTCATGGCCGGAGCCACCGCTACGGAGGAGGAGGCCGCTACGAGGAGTACCGAGGCCCCTCGCC
TGACGCCCACAGTGGGGGCCGCGACAGTTCCATCAAGAGTTACGGCCTGAGCGACCGCTACGGAGGAGGA
GGCCACTACGAGGAGTACCAGGGCAGCTTGCCTGACGCCTACAGCGGCGACCACGACAGATCCAGCAACA
GTTACGGCCGGAGCGACCGCTACTCGAGGGGTCGAGACCGGGTAGGCAGACCGGATCGTGGGCTCCCTCT
GCCCATGGAAACGGGCAGCCCTCCCCTGCATGATTCTTACAGCCGGTCAGGCTGCAGGGTGCCCAGGGGC
GGAGGCCGTCAAGGAGGCCGCTTCGAGAGGGGGGAAGGCCGGAGCAGATACTAA

Translation (1067 aa):
MMEADRPEKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDMN
GKYLDGKAIMVAQTIKPAFKSSRWVPPTPGSGSRSRFSHRTRGGGSSPQRPPSQGRPDDGRGYAGYFDLW
PYRAPMPRKRGPPPRHWASPPHKRATPSSLAHSVGCGMRGKAPTVSGQDGYSGLQPRRWAGPPHKRAVPR
SSLARIGGSGMPGKAPAVWGQDGYSGPRVREPLPPCRDPGDFVPALRDYSRRYYGHSSVPDYRPLRGDGN
QNGYRGRDHEYTDHPSKGSYREPLKSYGGPCGAAPVWGTPPSYGGGCRYEEYQGNSPDACSEGRSSEALP
VVLPDAYSRDHSPKAYSGGRSSSSNGYSRSDRYGEEGCYEEYRGRSPDAHSGGRNSSSNSYGQSHHYGGE
GRYEEYRGRSHEARSGGRSTDAHSRGRSDDAYSGGHDSSSWSDCCGGGGRYEEYQGRSLDANSGGCSPEA
YSGGHDNSSWSDRYGVGGHYEENRGHSLDANSGGRSPDTHSGGHSSSSNSYGQSHRYGGEGRYEYRGRSH
DAHSGGCSADAYSGGHDSSSQSNRYGGGGCYEEYRGRSLDANSGGRSPNAYSGGHDSSSWSHRYGGGGRY
EEYRGRSLDANSGGRSPDAYSGGHDSSGQSNCYGGGGRYEEYRGRLLDANSGGRSPDAYSGGHDSSSQSN
RYGGGGRYEEYRGHSLDANSGGRSPDTYSRGHDSSSQSDHYGGGGRSLDANSSGRLPDAYSGGHDSSSRS
HRYGGGGRYEEYRGRSLDANSGGRSPNAYSGGHNSSSRNDPCRGGGRYEENRGHSLDANSGGHSPNAYSG
GRDSSSNSYDRSHRYGGGGHYEEYRGRSHDTHSRGRSPDAHSGDHYTEAYSRGRDSFSNSYGRSDHYGRG
GCYEEYQGRSPNAYGGGRGLNSSNNSHGRSHRYGGGGRYEEYRGPSPDAHSGGRDSSIKSYGLSDRYGGG
GHYEEYQGSLPDAYSGDHDRSSNSYGRSDRYSRGRDRVGRPDRGLPLPMETGSPPLHDSYSRSGCRVPRG
GGRQGGRFERGEGRSRY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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