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Report for CCDS20183.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20183.1 Public Mus musculus 6 Ppm1k 23 108 98 CCDS HistoryNCBI Gene:243382Re-query CCDS DB by CCDS ID:20183.1Re-query CCDS DB by GeneID:243382See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20183.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042766.5 ENSMUSP00000041395.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042766.5Link to Ensembl Protein Viewer:ENSMUSP00000041395.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000042766Re-query CCDS DB by Protein ID:ENSMUSP00000041395
Original member Current member NCBI NM_175523.5 NP_780732.1 Accepted alive Link to Nucleotide Sequence:NM_175523.5Link to Protein Sequence:NP_780732.1Re-query CCDS DB by Nucleotide ID:NM_175523Re-query CCDS DB by Protein ID:NP_780732Link to BLAST:NP_780732.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780732.1 372 Q8BXN7 372 100% 0 0

Chromosomal Locations for CCDS 20183.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57510718 57510849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57513942 57514076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57514974 57515118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57515593 57515758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57522749 57522849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57524737 57525176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGTTATCAGCGGCCTTCATTACTTTGTTGAGAAGTGGTGGGAATCAGGTGAAGAAGAGAGTGTTGTTAA
GCTCCATCCTCCTGCAGGACCACAGGCAGGCGACTCCTGCCTGCTACTTCTCCACTTCAGAGGCCAGGTG
TTCTCGGTTTGATCCAGATGGAAGTGGGCAGCCAGCCACTTGGGACAATTTTGGGATCTGGGATAACCGC
ATTGATGAGCCAATTCTGCTGCCACCTAGCATCAAGTACGGCAAACCAATTCCCAAAATTAGCCTGGAGA
ACGTGGGCTGTGCCTCTCTCATTGGCAAACGGAAAGAAAACGAAGATCGATTTGGGTTTGCACAGCTGAC
AGAAGAGGTGCTATACTTCGCAGTCTATGATGGACATGGGGGCCCTGCAGCCGCTGACTTCTGTCACACA
CACATGGAGAAATGTGTTATGGATTTGCTTCCTCGGGAGAAAGACTTGGAAACTGTCCTGACCTTGGCCT
TTCTAGAAATAGATAAAGCCTTCGCGAGTTATGCCCACCTGTCTGCAGATGCAAGCCTCCTGACCTCTGG
GACTACTGCAACAGTAGCCCTGTTGAGAGATGGTGTTGAACTGGTGGTAGCCAGTGTTGGAGACAGCCGG
GCTCTTTTGTGTAGAAAAGGAAAACCCATGAAGCTGACCACTGACCATACCCCAGAAAGAAAAGATGAGA
AAGAAAGGATCAAGAAATTCGGTGGGTTTGTAGCTTGGAATAGTTTGGGACAGCCCCATGTAAATGGCAG
ACTTGCAATGACAAGGAGTATCGGAGATTTGGATCTTAAAGCCAGTGGGGTAATTGCAGAACCTGAGACA
ACAAGGATTAAGCTCTACCATGCTGACGACAGTTTCCTGGTCCTTACCACAGATGGGATTAACTTCATGG
TGAATAGTCAAGAGATCTGCGACTTTGTCAACCAGTGCCACGATCCTAAAGAAGCAGCTCATTCGGTGAC
TGAGCAGGCAATACAGTACGGTACCGAAGACAACAGCACTGCAGTAGTGGTGCCCTTTGGTGCTTGGGGA
AAATACAAGAACTCTGAAATTACCTTCTCATTCAGCAGAAGCTTTGCCTCCAGTGGGAGATGGGCCTGA

Translation (372 aa):
MLSAAFITLLRSGGNQVKKRVLLSSILLQDHRQATPACYFSTSEARCSRFDPDGSGQPATWDNFGIWDNR
IDEPILLPPSIKYGKPIPKISLENVGCASLIGKRKENEDRFGFAQLTEEVLYFAVYDGHGGPAAADFCHT
HMEKCVMDLLPREKDLETVLTLAFLEIDKAFASYAHLSADASLLTSGTTATVALLRDGVELVVASVGDSR
ALLCRKGKPMKLTTDHTPERKDEKERIKKFGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKASGVIAEPET
TRIKLYHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPKEAAHSVTEQAIQYGTEDNSTAVVVPFGAWG
KYKNSEITFSFSRSFASSGRWA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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