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Report for CCDS22436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22436.1 Public Mus musculus 8 Mmaa 23 108 98 CCDS HistoryNCBI Gene:109136Re-query CCDS DB by CCDS ID:22436.1Re-query CCDS DB by GeneID:109136See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048718.3 ENSMUSP00000048826.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048718.3Link to Ensembl Protein Viewer:ENSMUSP00000048826.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000048718Re-query CCDS DB by Protein ID:ENSMUSP00000048826
Original member Current member NCBI NM_001363470.1 NP_001350399.1 Accepted alive Link to Nucleotide Sequence:NM_001363470.1Link to Protein Sequence:NP_001350399.1Re-query CCDS DB by Nucleotide ID:NM_001363470Re-query CCDS DB by Protein ID:NP_001350399Link to BLAST:NP_001350399.1
Original member Current member NCBI NM_133823.5 NP_598584.2 Accepted alive Link to Nucleotide Sequence:NM_133823.5Link to Protein Sequence:NP_598584.2Re-query CCDS DB by Nucleotide ID:NM_133823Re-query CCDS DB by Protein ID:NP_598584Link to BLAST:NP_598584.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350399.1 415 Q8C7H1 415 100% 0 0
NP_598584.2 415 Q8C7H1 415 100% 0 0

Chromosomal Locations for CCDS 22436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 79267928 79268215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79269133 79269282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79270890 79270975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79274104 79274274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79278202 79278324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79281177 79281606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGACTATTTCCACGCTGCTACTTTCTCCTAATCGGCGTTTACTAACCTGCCTCTCAAGAGTGCCTTCCC
CATGGCTCCTTCACTCAAGTCACCCTGCACCGGGACCCCCAGGTGCTCTGCCAAACTGTTTTGGACACCA
TTGTACTAAGAGGGTGCTACTGTCTGACGGCTTCAGGAGAACATTATGTGTCCAGGCAACCTTGAAGGAC
CACACAGAAGGACTTTCTGATAAAGAACAAAGATTTGTGGATAGACTTTATACGGGTTTAGTGAAAGGAC
AGAGAGCTTGCCTAGCGGAGGCCATAACTCTCGTGGAATCAACCCATACAAGGAAGAGGGAGCTGGCTCA
GGTGCTTCTGCAGAGAGTCTTAGCCCTCCAGCGGGAGCAGGAGCTGCGGAACCAAGGAAAGCCCCTCACA
TTTCGAGTAGGACTGTCCGGGCCCCCTGGTGCAGGAAAATCAACATTCATAGAATGTTTTGGGAAAATGC
TGACTGAGCAAGGGCACAGGTTATCTGTGCTAGCTGTGGATCCATCTTCTTGCACCAGTGGTGGGTCCCT
CTTAGGTGATAAAACCCGGATGATTGAGCTGTCAAGAGATATGAATGCCTACATCAGGCCCTCTCCTACC
AGTGGGACTCTAGGAGGAGTGACAAGGACCACAAATGAAGCCATTGTGTTGTGTGAAGGAGGGGGCTATG
ACATCATTCTTATTGAAACCGTCGGTGTAGGGCAGTCGGAGTTTGCTGTGGCTGACATGGTCGATATGTT
TGTTTTATTGCTGCCACCAGCAGGAGGGGATGAACTGCAGGGCATCAAAAGGGGCATCATTGAAATGGCA
GATTTGGTTGTTATAACTAAATCTGATGGAGACTTGATTGTGCCAGCCCGCAGGATCCAAGCAGAGTACG
TGAGCGCACTCAAGTTGCTCCGTAGGCGCTCGGAAGTCTGGAGGCCAAAGGTGATTCGCATTTCTGCCAG
AAGTGGAGAGGGCATCACTGAGATGTGGGACACAATGAGAGAGTTTCAGCACCAAATGCTGGCCAGTGGG
GAGCTGGCTGCCAAGAGACAGACACAGCACAAAGTCTGGATGTGGAATCTCATTCAGGAAAACGTCCTAG
AACACTTCAAGACCCACCCCAGCATCCGAGAACAGATCCCCCTGATGGAGAGAAAGGTCCTCAGTGGAGC
CCTCTCCCCAGGACGAGCAGCAGACTTGTTGCTAAAAGCTTTTAAAAGCAGACACTAA

Translation (415 aa):
MTISTLLLSPNRRLLTCLSRVPSPWLLHSSHPAPGPPGALPNCFGHHCTKRVLLSDGFRRTLCVQATLKD
HTEGLSDKEQRFVDRLYTGLVKGQRACLAEAITLVESTHTRKRELAQVLLQRVLALQREQELRNQGKPLT
FRVGLSGPPGAGKSTFIECFGKMLTEQGHRLSVLAVDPSSCTSGGSLLGDKTRMIELSRDMNAYIRPSPT
SGTLGGVTRTTNEAIVLCEGGGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMA
DLVVITKSDGDLIVPARRIQAEYVSALKLLRRRSEVWRPKVIRISARSGEGITEMWDTMREFQHQMLASG
ELAAKRQTQHKVWMWNLIQENVLEHFKTHPSIREQIPLMERKVLSGALSPGRAADLLLKAFKSRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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