NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6360.1 Public Homo sapiens 8 GSDMC 24 110 108 CCDS HistoryNCBI Gene:56169Re-query CCDS DB by CCDS ID:6360.1Re-query CCDS DB by GeneID:56169See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6360.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276708.9 ENSP00000276708.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000276708.9Link to Ensembl Protein Viewer:ENSP00000276708.4Re-query CCDS DB by Nucleotide ID:ENST00000276708Re-query CCDS DB by Protein ID:ENSP00000276708
Original member Current member EBI ENST00000619643.1 ENSP00000482343.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619643.1Link to Ensembl Protein Viewer:ENSP00000482343.1Re-query CCDS DB by Nucleotide ID:ENST00000619643Re-query CCDS DB by Protein ID:ENSP00000482343
Original member Current member NCBI NM_031415.3 NP_113603.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031415.3Link to Protein Sequence:NP_113603.1Re-query CCDS DB by Nucleotide ID:NM_031415Re-query CCDS DB by Protein ID:NP_113603Link to BLAST:NP_113603.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113603.1 508 Q9BYG8 508 100% 0 0

Chromosomal Locations for CCDS 6360.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 129748501 129748740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129749452 129749525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129749990 129750119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129750431 129750570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129751542 129751568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129751862 129751891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129752106 129752147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129752698 129752820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129760545 129760589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129762626 129762731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129765628 129765793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129776102 129776285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129777368 129777587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGCCCTCCATGTTGGAACGCATTAGCAAAAATTTGGTCAAAGAGATTGGAAGCAAAGACCTGACACCTG
TCAAATACCTATTGAGTGCCACCAAATTACGTCAGTTTGTTATATTACGAAAGAAGAAGGATTCTCGTTC
ATCATTTTGGGAACAATCTGACTATGTTCCAGTTGAATTCTCCCTCAATGACATCCTGGAGCCAAGTTCT
TCAGTCCTAGAAACTGTTGTGACAGGACCGTTCCACTTCAGTGACATTATGATCCAGAAGCATAAGGCTG
ACATGGGTGTGAATGTTGGTATAGAAGTGAGTGTGTCAGGGGAGGCCTCTGTGGACCATGGATGCTCCCT
CGAGTTTCAAATTGTTACCATCCCATCACCAAACCTGGAAGACTTTCAAAAAAGGAAACTGTTGGATCCA
GAGCCATCATTTCTGAAGGAGTGCCGGAGGAGAGGGGACAACCTGTACGTGGTGACAGAGGCTGTTGAAC
TGATCAACAATACTGTGCTGTACGATAGCAGTAGTGTGAATATTTTAGGGAAAATTGCTCTTTGGATTAC
CTATGGCAAGGGTCAAGGCCAAGGAGAGAGTCTCAGAGTGAAGAAGAAGGCGCTGACTCTTCAGAAAGGC
ATGGTGATGGCTTATAAGAGAAAGCAGCTGGTTATCAAGGAGAAAGCCATTCTCATCTCAGATGATGATG
AACAGAGAACCTTTCAAGATGAGTACGAAATTTCCGAAATGGTAGGCTACTGTGCTGCGAGGAGTGAGGG
GTTGCTACCATCATTTCATACCATCTCTCCAACCCTCTTCAATGCCTCATCCAATGATATGAAGTTAAAA
CCAGAGCTATTTCTGACACAGCAATTTTTGAGCGGGCATTTGCCAAAATACGAACAAGTTCACATCCTCC
CAGTAGGAAGAATAGAGGAACCCTTCTGGCAAAATTTCAAGCATCTACAAGAGGAGGTTTTCCAGAAAAT
AAAGACACTGGCTCAGCTCTCAAAGGATGTTCAGGATGTCATGTTCTACAGTATCCTGGCCATGCTCAGA
GACAGAGGGGCTCTACAGGACCTGATGAACATGCTGGAATTGGACAGCTCAGGTCATTTGGATGGCCCTG
GTGGTGCCATCCTAAAGAAACTTCAACAGGATTCAAACCATGCATGGTTTAACCCAAAGGACCCCATTCT
TTATCTCCTTGAAGCCATAATGGTGCTGAGTGACTTCCAACACGATTTGCTGGCCTGTTCCATGGAGAAG
AGGATCCTGCTTCAGCAACAGGAGCTGGTAAGGAGCATCCTGGAGCCAAACTTCAGATACCCCTGGAGCA
TTCCCTTCACCCTCAAACCTGAGCTCCTCGCCCCACTCCAGAGTGAGGGTTTGGCCATCACCTATGGCCT
GCTGGAGGAGTGTGGCCTTAGGATGGAGCTGGATAACCCCAGGTCAACCTGGGATGTAGAAGCAAAGATG
CCCCTGTCTGCCCTCTATGGGACTCTCTCGTTGCTGCAGCAGCTGGCTGAGGCCTAA

Translation (508 aa):
MPSMLERISKNLVKEIGSKDLTPVKYLLSATKLRQFVILRKKKDSRSSFWEQSDYVPVEFSLNDILEPSS
SVLETVVTGPFHFSDIMIQKHKADMGVNVGIEVSVSGEASVDHGCSLEFQIVTIPSPNLEDFQKRKLLDP
EPSFLKECRRRGDNLYVVTEAVELINNTVLYDSSSVNILGKIALWITYGKGQGQGESLRVKKKALTLQKG
MVMAYKRKQLVIKEKAILISDDDEQRTFQDEYEISEMVGYCAARSEGLLPSFHTISPTLFNASSNDMKLK
PELFLTQQFLSGHLPKYEQVHILPVGRIEEPFWQNFKHLQEEVFQKIKTLAQLSKDVQDVMFYSILAMLR
DRGALQDLMNMLELDSSGHLDGPGGAILKKLQQDSNHAWFNPKDPILYLLEAIMVLSDFQHDLLACSMEK
RILLQQQELVRSILEPNFRYPWSIPFTLKPELLAPLQSEGLAITYGLLEECGLRMELDNPRSTWDVEAKM
PLSALYGTLSLLQQLAEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH