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Report for CCDS5661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5661.1 Public Homo sapiens 7 ARPC1B 24 110 108 CCDS HistoryNCBI Gene:10095Re-query CCDS DB by CCDS ID:5661.1Re-query CCDS DB by GeneID:10095See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5661.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458033.6 ENSP00000388802.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458033.6Link to Ensembl Protein Viewer:ENSP00000388802.2Re-query CCDS DB by Nucleotide ID:ENST00000458033Re-query CCDS DB by Protein ID:ENSP00000388802
Original member Current member EBI ENST00000451682.5 ENSP00000389631.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451682.5Link to Ensembl Protein Viewer:ENSP00000389631.1Re-query CCDS DB by Nucleotide ID:ENST00000451682Re-query CCDS DB by Protein ID:ENSP00000389631
Original member Current member EBI ENST00000431816.6 ENSP00000398110.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431816.6Link to Ensembl Protein Viewer:ENSP00000398110.2Re-query CCDS DB by Nucleotide ID:ENST00000431816Re-query CCDS DB by Protein ID:ENSP00000398110
Original member Current member EBI ENST00000414376.6 ENSP00000398620.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414376.6Link to Ensembl Protein Viewer:ENSP00000398620.2Re-query CCDS DB by Nucleotide ID:ENST00000414376Re-query CCDS DB by Protein ID:ENSP00000398620
Original member Current member EBI ENST00000427217.6 ENSP00000403211.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427217.6Link to Ensembl Protein Viewer:ENSP00000403211.2Re-query CCDS DB by Nucleotide ID:ENST00000427217Re-query CCDS DB by Protein ID:ENSP00000403211
Original member Current member EBI ENST00000455009.6 ENSP00000410238.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455009.6Link to Ensembl Protein Viewer:ENSP00000410238.2Re-query CCDS DB by Nucleotide ID:ENST00000455009Re-query CCDS DB by Protein ID:ENSP00000410238
Original member Current member EBI ENST00000645391.1 ENSP00000494033.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645391.1Link to Ensembl Protein Viewer:ENSP00000494033.1Re-query CCDS DB by Nucleotide ID:ENST00000645391Re-query CCDS DB by Protein ID:ENSP00000494033
Original member Current member EBI ENST00000646101.2 ENSP00000496599.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000646101.2Link to Ensembl Protein Viewer:ENSP00000496599.1Re-query CCDS DB by Nucleotide ID:ENST00000646101Re-query CCDS DB by Protein ID:ENSP00000496599
Original member Current member NCBI NM_005720.4 NP_005711.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005720.4Link to Protein Sequence:NP_005711.1Re-query CCDS DB by Nucleotide ID:NM_005720Re-query CCDS DB by Protein ID:NP_005711Link to BLAST:NP_005711.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005711.1 372 O15143 372 100% 0 0

Chromosomal Locations for CCDS 5661.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99385715 99385778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99386685 99386789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99388039 99388261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99389905 99390012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99390893 99391099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99391178 99391253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99392671 99392876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99394029 99394119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99394451 99394489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCCTACCACAGCTTCCTGGTGGAGCCCATCAGCTGCCACGCCTGGAACAAGGACCGCACCCAGATTG
CCATCTGCCCCAACAACCATGAGGTGCATATCTATGAAAAGAGCGGTGCCAAATGGACCAAGGTGCACGA
GCTCAAGGAGCACAACGGGCAGGTGACAGGCATCGACTGGGCCCCCGAGAGTAACCGTATTGTGACCTGC
GGCACAGACCGCAACGCCTACGTGTGGACGCTGAAGGGCCGCACATGGAAGCCCACGCTGGTCATCCTGC
GGATCAACCGGGCTGCCCGCTGCGTGCGCTGGGCCCCCAACGAGAACAAGTTTGCTGTGGGCAGCGGCTC
TCGTGTGATCTCCATCTGTTATTTCGAGCAGGAGAATGACTGGTGGGTTTGCAAGCACATCAAGAAGCCC
ATCCGCTCCACCGTCCTCAGCCTGGACTGGCACCCCAACAATGTGCTGCTGGCTGCCGGCTCCTGTGACT
TCAAGTGTCGGATCTTTTCAGCCTACATCAAGGAGGTGGAGGAACGGCCGGCACCCACCCCGTGGGGCTC
CAAGATGCCCTTTGGGGAACTGATGTTCGAATCCAGCAGTAGCTGCGGCTGGGTACATGGCGTCTGTTTC
TCAGCCAGCGGGAGCCGCGTGGCCTGGGTAAGCCACGACAGCACCGTCTGCCTGGCTGATGCCGACAAGA
AGATGGCCGTCGCGACTCTGGCCTCTGAAACACTACCACTGCTGGCGCTGACCTTCATCACAGACAACAG
CCTGGTGGCAGCGGGCCACGACTGCTTCCCGGTGCTGTTCACCTATGACGCCGCCGCGGGGATGCTGAGC
TTCGGCGGGCGGCTGGACGTTCCTAAGCAGAGCTCGCAGCGTGGCTTGACGGCCCGCGAGCGCTTCCAGA
ACCTGGACAAGAAGGCGAGCTCCGAGGGTGGCACGGCTGCGGGCGCGGGCCTAGACTCGCTGCACAAGAA
CAGCGTCAGCCAGATCTCGGTGCTCAGCGGCGGCAAGGCCAAGTGCTCGCAGTTCTGCACCACTGGCATG
GATGGCGGCATGAGTATCTGGGATGTGAAGAGCTTGGAGTCAGCCTTGAAGGACCTCAAGATCAAATGA

Translation (372 aa):
MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDWAPESNRIVTC
GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKP
IRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF
SASGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLS
FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM
DGGMSIWDVKSLESALKDLKIK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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