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Report for CCDS23990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23990.1 Public Mus musculus 10 Fstl3 23 108 98 CCDS HistoryNCBI Gene:83554Re-query CCDS DB by CCDS ID:23990.1Re-query CCDS DB by GeneID:83554See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23990.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020575.4 ENSMUSP00000020575.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020575.4Link to Ensembl Protein Viewer:ENSMUSP00000020575.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020575Re-query CCDS DB by Protein ID:ENSMUSP00000020575
Original member Current member NCBI NM_031380.2 NP_113557.1 Accepted alive Link to Nucleotide Sequence:NM_031380.2Link to Protein Sequence:NP_113557.1Re-query CCDS DB by Nucleotide ID:NM_031380Re-query CCDS DB by Protein ID:NP_113557Link to BLAST:NP_113557.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113557.1 256 Q9EQC7 256 100% 0 0

Chromosomal Locations for CCDS 23990.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79777301 79777397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79778563 79778748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79779965 79780180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79781124 79781351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79781432 79781475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGCGTTCTGGGGCACTGTGGCCGCTGCTTTGGGGAGCCCTGGTCTGGACAGTGGGATCCGTGGGCGCCG
TGATGGGCTCCGAGGATTCTGTGCCCGGTGGCGTGTGCTGGCTCCAGCAGGGCAGAGAGGCCACCTGCAG
TCTGGTGCTGAAGACTCGTGTCAGCCGGGAGGAGTGCTGTGCTTCCGGCAACATCAACACCGCCTGGTCC
AACTTCACCCACCCAGGCAATAAAATCAGCCTGCTAGGGTTCCTGGGCCTCGTCCACTGCCTCCCCTGCA
AAGATTCCTGCGACGGAGTGGAGTGCGGCCCCGGCAAGGCGTGCCGCATGCTGGGGGGCCGTCCACACTG
CGAGTGCGTGCCCAACTGCGAGGGGCTTCCCGCGGGCTTCCAGGTCTGCGGCTCTGATGGCGCCACCTAC
CGGGACGAATGCGAACTGCGCACCGCGCGCTGTCGCGGACACCCAGACTTGCGCGTCATGTACCGCGGCC
GCTGTCAAAAGTCTTGCGCTCAGGTAGTGTGCCCGCGTCCCCAGTCGTGCCTTGTGGATCAGACCGGCAG
CGCACACTGCGTGGTGTGTCGCGCTGCGCCCTGCCCAGTACCTTCCAACCCCGGCCAAGAACTCTGTGGC
AACAACAACGTTACCTACATCTCGTCGTGTCACCTGCGCCAGGCCACTTGCTTCCTGGGCCGCTCCATTG
GGGTTCGGCACCCAGGCATCTGCACAGGTGGCCCCAAAGTACCAGCAGAGGAGGAAGAGAACTTCGTGTG
A

Translation (256 aa):
MRSGALWPLLWGALVWTVGSVGAVMGSEDSVPGGVCWLQQGREATCSLVLKTRVSREECCASGNINTAWS
NFTHPGNKISLLGFLGLVHCLPCKDSCDGVECGPGKACRMLGGRPHCECVPNCEGLPAGFQVCGSDGATY
RDECELRTARCRGHPDLRVMYRGRCQKSCAQVVCPRPQSCLVDQTGSAHCVVCRAAPCPVPSNPGQELCG
NNNVTYISSCHLRQATCFLGRSIGVRHPGICTGGPKVPAEEEENFV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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