NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88254.1 Public Mus musculus 11 Nt5c3b 23 108 98 CCDS HistoryNCBI Gene:68106Re-query CCDS DB by CCDS ID:88254.1Re-query CCDS DB by GeneID:68106See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107397.1 ENSMUSP00000103020.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107397.1Link to Ensembl Protein Viewer:ENSMUSP00000103020.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107397Re-query CCDS DB by Protein ID:ENSMUSP00000103020
Original member Current member NCBI NM_001362966.1 NP_001349895.1 Accepted alive Link to Nucleotide Sequence:NM_001362966.1Link to Protein Sequence:NP_001349895.1Re-query CCDS DB by Nucleotide ID:NM_001362966Re-query CCDS DB by Protein ID:NP_001349895Link to BLAST:NP_001349895.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349895.1 292 Q3UFY7-4 292 100% 0 0

Chromosomal Locations for CCDS 88254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100429815 100429949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100431077 100431277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100432918 100433080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100434695 100434784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100436155 100436240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100440040 100440086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100440185 100440254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100440829 100440915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGAAGGCCACGGTCCTGATGCGGCAGCCCGGACGGGTGCAGGAAATTGTGGGCGCCCTTCGCAGGGGCG
GAGGAGACCGCCTGCAGGTGATTTCCGATTTTGACATGACCCTGAGCAGATTTGCTTACAATGGACAGCG
ATGCCCTTCTTCCCACAATATTCTGGATAACAGCAAAATTATCAGTGAGGATTGTCGCAAAGAGCTCACC
GAGCTCTTTCACCACTATTATCCCATTGAGATCGACCCACACCGGACCATCAAAGAGAAGCTGCCTCACA
TGGTGCAGTGGTGGAGCAAAGCCCACAGTCTCCTGTGCCAGCAGAGGATCCAGAAAGTCCAGATCGCTCA
GGTGGTTGGAGAGTCCACTGCGATGCTCAGGGAGGGCTATAAGACGTTCTTCGACACACTCTACCAGAAC
AACATCCCCCTTTTCATCTTCTCAGCGGGCATTGGTGACATCCTGGAAGAAATTATCCGACAGATGAAAG
TGTTCCACCCCAACATCCACATTGTGTCCAACTACATGGACTTCAGTGAGGATGGATTCCTGAAAGGATT
CAAGGGGCAGCTCATTCACACCTACAACAAGAACAGCTCCGTGTGTGAGAACTCCAGCTACTTCCAGCAA
CTTCAGAACAAGACCAACATCATCCTGCTGGGAGACTCCATCGGGGACCTCACCATGGCTGATGGGGTCC
CCGGGGTGCAGAACATTCTCAAGATCGGCTTCCTGAATGACAAGGTGGAGGAGCGGCGGGAGCGTTACAT
GGACTCCTACGACATTGTGTTGGAGAAGGACGAGACGCTGGACGTGGTTAATGGGTTGCTGCGGCACATC
CTTTACCAGGGGGACTGCGTGGAGCTCCAGGGCTCTTAA

Translation (292 aa):
MKATVLMRQPGRVQEIVGALRRGGGDRLQVISDFDMTLSRFAYNGQRCPSSHNILDNSKIISEDCRKELT
ELFHHYYPIEIDPHRTIKEKLPHMVQWWSKAHSLLCQQRIQKVQIAQVVGESTAMLREGYKTFFDTLYQN
NIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFSEDGFLKGFKGQLIHTYNKNSSVCENSSYFQQ
LQNKTNIILLGDSIGDLTMADGVPGVQNILKIGFLNDKVEERRERYMDSYDIVLEKDETLDVVNGLLRHI
LYQGDCVELQGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH