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Report for CCDS14030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14030.1 Public Homo sapiens 22 NAGA 24 110 108 CCDS HistoryNCBI Gene:4668Re-query CCDS DB by CCDS ID:14030.1Re-query CCDS DB by GeneID:4668See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396398.8 ENSP00000379680.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396398.8Link to Ensembl Protein Viewer:ENSP00000379680.3Re-query CCDS DB by Nucleotide ID:ENST00000396398Re-query CCDS DB by Protein ID:ENSP00000379680
Original member Current member EBI ENST00000402937.1 ENSP00000384603.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402937.1Link to Ensembl Protein Viewer:ENSP00000384603.1Re-query CCDS DB by Nucleotide ID:ENST00000402937Re-query CCDS DB by Protein ID:ENSP00000384603
Original member Current member EBI ENST00000403363.5 ENSP00000385283.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403363.5Link to Ensembl Protein Viewer:ENSP00000385283.1Re-query CCDS DB by Nucleotide ID:ENST00000403363Re-query CCDS DB by Protein ID:ENSP00000385283
Original member Current member NCBI NM_000262.3 NP_000253.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000262.3Link to Protein Sequence:NP_000253.1Re-query CCDS DB by Nucleotide ID:NM_000262Re-query CCDS DB by Protein ID:NP_000253Link to BLAST:NP_000253.1
Original member Current member NCBI NM_001362848.1 NP_001349777.1 Accepted alive Link to Nucleotide Sequence:NM_001362848.1Link to Protein Sequence:NP_001349777.1Re-query CCDS DB by Nucleotide ID:NM_001362848Re-query CCDS DB by Protein ID:NP_001349777Link to BLAST:NP_001349777.1
Original member Current member NCBI NM_001362850.1 NP_001349779.1 Accepted alive Link to Nucleotide Sequence:NM_001362850.1Link to Protein Sequence:NP_001349779.1Re-query CCDS DB by Nucleotide ID:NM_001362850Re-query CCDS DB by Protein ID:NP_001349779Link to BLAST:NP_001349779.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000253.1 411 P17050 411 100% 0 0
NP_001349777.1 411 P17050 411 100% 0 0
NP_001349779.1 411 P17050 411 100% 0 0

Chromosomal Locations for CCDS 14030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 42060279 42060413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42060924 42061067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42062827 42063024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42065738 42065899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42066710 42066804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42067113 42067290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42067765 42067936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42068439 42068574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42070282 42070297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGCTGCTGAAGACAGTGCTCTTGCTGGGACATGTGGCCCAGGTGCTGATGCTGGACAATGGGCTCCTGC
AGACACCACCCATGGGCTGGCTGGCCTGGGAACGCTTCCGCTGCAACATTAACTGTGATGAGGACCCAAA
GAACTGCATAAGTGAACAGCTCTTCATGGAGATGGCTGACCGGATGGCACAGGATGGATGGCGGGACATG
GGCTACACATACCTCAACATTGATGACTGCTGGATCGGTGGTCGCGATGCCAGTGGCCGCCTGATGCCGG
ATCCCAAGCGCTTCCCTCATGGCATTCCTTTCCTGGCTGACTACGTTCACTCCCTGGGCCTGAAGTTGGG
TATCTACGCGGACATGGGCAACTTCACCTGCATGGGTTACCCAGGCACCACACTGGACAAGGTGGTCCAG
GATGCTCAGACCTTCGCCGAGTGGAAGGTAGACATGCTCAAGCTGGATGGCTGCTTCTCCACCCCCGAGG
AGCGGGCCCAGGGGTACCCCAAGATGGCTGCTGCCCTGAATGCCACAGGCCGCCCCATCGCCTTCTCCTG
CAGCTGGCCAGCCTATGAAGGCGGCCTCCCCCCAAGGGTGAACTACAGTCTGCTGGCGGACATCTGCAAC
CTCTGGCGTAACTATGATGACATCCAGGACTCCTGGTGGAGCGTGCTCTCCATCCTGAATTGGTTCGTGG
AGCACCAGGACATACTGCAGCCAGTGGCCGGCCCTGGGCACTGGAATGACCCTGACATGCTGCTCATTGG
GAACTTTGGTCTCAGCTTAGAGCAATCCCGGGCCCAGATGGCCCTGTGGACGGTGCTGGCAGCCCCCCTC
TTGATGTCCACAGACCTGCGTACCATCTCCGCCCAGAACATGGACATTCTGCAGAATCCACTCATGATCA
AAATCAACCAGGATCCCTTAGGCATCCAGGGACGCAGGATTCACAAGGAAAAATCTCTCATCGAAGTGTA
CATGCGGCCTCTGTCCAACAAGGCTAGCGCCTTAGTCTTCTTCAGCTGCAGGACCGATATGCCTTATCGC
TACCACTCCTCCCTTGGCCAGCTGAACTTCACCGGGTCTGTGATATATGAGGCCCAGGACGTCTACTCAG
GTGACATCATCAGTGGCCTCCGAGATGAAACCAACTTCACAGTGATCATCAACCCTTCAGGGGTAGTGAT
GTGGTACCTGTATCCCATCAAGAACCTGGAGATGTCCCAGCAGTGA

Translation (411 aa):
MLLKTVLLLGHVAQVLMLDNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDM
GYTYLNIDDCWIGGRDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMGNFTCMGYPGTTLDKVVQ
DAQTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATGRPIAFSCSWPAYEGGLPPRVNYSLLADICN
LWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDMLLIGNFGLSLEQSRAQMALWTVLAAPL
LMSTDLRTISAQNMDILQNPLMIKINQDPLGIQGRRIHKEKSLIEVYMRPLSNKASALVFFSCRTDMPYR
YHSSLGQLNFTGSVIYEAQDVYSGDIISGLRDETNFTVIINPSGVVMWYLYPIKNLEMSQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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