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Report for CCDS36988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36988.1 Public Mus musculus 14 Sugt1 23 108 98 CCDS HistoryNCBI Gene:67955Re-query CCDS DB by CCDS ID:36988.1Re-query CCDS DB by GeneID:67955See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36988.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054908.9 ENSMUSP00000052942.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054908.9Link to Ensembl Protein Viewer:ENSMUSP00000052942.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000054908Re-query CCDS DB by Protein ID:ENSMUSP00000052942
Original member Current member NCBI NM_026474.6 NP_080750.1 Accepted alive Link to Nucleotide Sequence:NM_026474.6Link to Protein Sequence:NP_080750.1Re-query CCDS DB by Nucleotide ID:NM_026474Re-query CCDS DB by Protein ID:NP_080750Link to BLAST:NP_080750.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080750.1 336 Q9CX34 336 100% 0 0

Chromosomal Locations for CCDS 36988.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 79587829 79587866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79587954 79588011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79595369 79595459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79596748 79596817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79597396 79597466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79602847 79602900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79603470 79603486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79607246 79607277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79608956 79609052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79610240 79610347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79619709 79619799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79624841 79625022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79628852 79628953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGCGGCAGCTGCAGCAGGACCTGCATCGTCCCAGCGGCTTTTCCAGAGCTTCTCAGATGCTCTGATCG
ACGGGGATCCCCAGGCAGCATTAGAGGAGCTGACCAAGGCCTTGGAACAGAATCCGGATGACGCACAGTA
TTACTGTCAGAGAGCTTATTGTCACATTCTTCTTGGGAAATACCGTGATGGTATTGCCGATGTAAAGAAG
TCTCTTGAACTCAATCCAAATAATTGTACTGCTCTTCTGAGGAAAGGGATATGTGAATACCATGAAAAAG
ACTACGCTTCTGCCTTAGAAACATTTGCAGAGGGACAGAAATTAGATAGTACAGATACCAATTTTGACAC
CTGGATTAAAAGATGCCAAGAAATTCAGAATGGATCAGAATCTGAAGTGTCTGCATCTCAGAGGACCCAG
TCAAAAATCAAGTATGACTGGTATCAAACCGAGTCTCACGTAATCATCACCCTTATGATCAAGAGCGTTC
AGAAGAATGATGTACGTGTGGGATTTTCAGAGAGAGAGTTGTCTGCTTTGGTGAAAATTCCTGCTGGAGA
AGACTACAGTTTGAAGCTGAGGCTGCTCCACCCTATAATACCAGAACAGAGTACATTCAAAGTACTTTCA
ACAAAGATTGAAATTAAAATGAAAAAGCCAGAGGCGGTGAGATGGGAAAAGCTAGAGGGACAAGGAGATG
AGCCCACACCGAAACAGTTCACAGCAGATGTAAAGAACATGTATCCGTCCTCATCTCACTATACCCGGAA
CTGGGATAAGTTGGTTGGCGAAATCAAAGAAGAAGAAAAGAACGAGAAGCTGGAGGGCGACGCAGCTTTA
AACAAGTTATTCCAGCAGATCTACTCAGACGGTTCCGATGAAGTGAAACGTGCCATGAACAAGTCATTTA
TGGAGTCTGGTGGTACAGTCTTGAGTACCAACTGGTCTGATGTAGGTAAAAGGAAAGTTGAAATCAACCC
TCCCGATGATATGGAATGGAAACAGTACTAA

Translation (336 aa):
MAAAAAGPASSQRLFQSFSDALIDGDPQAALEELTKALEQNPDDAQYYCQRAYCHILLGKYRDGIADVKK
SLELNPNNCTALLRKGICEYHEKDYASALETFAEGQKLDSTDTNFDTWIKRCQEIQNGSESEVSASQRTQ
SKIKYDWYQTESHVIITLMIKSVQKNDVRVGFSERELSALVKIPAGEDYSLKLRLLHPIIPEQSTFKVLS
TKIEIKMKKPEAVRWEKLEGQGDEPTPKQFTADVKNMYPSSSHYTRNWDKLVGEIKEEEKNEKLEGDAAL
NKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEWKQY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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