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Report for CCDS21322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21322.1 Public Mus musculus 7 Gabra5 23 108 98 CCDS HistoryNCBI Gene:110886Re-query CCDS DB by CCDS ID:21322.1Re-query CCDS DB by GeneID:110886See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068456.7 ENSMUSP00000063276.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068456.7Link to Ensembl Protein Viewer:ENSMUSP00000063276.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000068456Re-query CCDS DB by Protein ID:ENSMUSP00000063276
Original member Current member EBI ENSMUST00000206734.1 ENSMUSP00000145685.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206734.1Link to Ensembl Protein Viewer:ENSMUSP00000145685.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206734Re-query CCDS DB by Protein ID:ENSMUSP00000145685
Original member Current member EBI ENSMUST00000206382.1 ENSMUSP00000146238.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206382.1Link to Ensembl Protein Viewer:ENSMUSP00000146238.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206382Re-query CCDS DB by Protein ID:ENSMUSP00000146238
Original member Current member NCBI NM_001362161.1 NP_001349090.1 Accepted alive Link to Nucleotide Sequence:NM_001362161.1Link to Protein Sequence:NP_001349090.1Re-query CCDS DB by Nucleotide ID:NM_001362161Re-query CCDS DB by Protein ID:NP_001349090Link to BLAST:NP_001349090.1
Original member Current member NCBI NM_001362162.1 NP_001349091.1 Accepted alive Link to Nucleotide Sequence:NM_001362162.1Link to Protein Sequence:NP_001349091.1Re-query CCDS DB by Nucleotide ID:NM_001362162Re-query CCDS DB by Protein ID:NP_001349091Link to BLAST:NP_001349091.1
Original member Current member NCBI NM_176942.4 NP_795916.1 Accepted alive Link to Nucleotide Sequence:NM_176942.4Link to Protein Sequence:NP_795916.1Re-query CCDS DB by Nucleotide ID:NM_176942Re-query CCDS DB by Protein ID:NP_795916Link to BLAST:NP_795916.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349090.1 463 Q8BHJ7 463 100% 0 0
NP_001349091.1 463 Q8BHJ7 463 100% 0 0
NP_795916.1 463 Q8BHJ7 463 100% 0 0

Chromosomal Locations for CCDS 21322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 57408607 57408909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 57413586 57413797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 57418220 57418372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 57421743 57421886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 57452945 57453027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 57488802 57489022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 57489127 57489194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 57490740 57490861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 57507979 57508064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGACAATGGAATGCTCTCTAGATTTATCATGACCCAAACCCTCCTTGTCTTCTGTATTTCCATGACCT
TATCCAGTCACTTTGGCTTTTCGCAAATGCCAACTAGTTCTGTACAAGACGAGACCAATGACAACATCAC
AATATTCACCAGGATCTTGGACGGACTCTTGGATGGCTATGACAACAGACTGCGGCCTGGGCTGGGAGAG
CGAATCACGCAGGTGCGAACAGACATCTATGTTACCAGCTTTGGCCCAGTGTCTGACACGGAAATGGAAT
ATACCATCGATGTGTTTTTCCGGCAAAGCTGGAAAGATGAAAGGCTGCGGTTTAAGGGCCCCATGCAACG
CCTCCCTCTCAACAACCTTCTTGCCAGCAAAATCTGGACTCCAGACACGTTCTTCCACAACGGCAAGAAG
TCCATTGCACACAACATGACGACACCCAACAAGCTGCTGAGGCTGGAGGATGATGGCACACTTCTCTACA
CCATGCGTCTGACAATCTCTGCTGAGTGCCCAATGCAGCTTGAGGACTTTCCAATGGATGCCCATGCCTG
TCCCCTGAAATTTGGCAGTTATGCTTACCCTAATTCTGAAGTTGTCTATGTTTGGACCAATGGCTCCACC
AAGTCTGTGGTGGTGGCAGAAGATGGCTCCAGGCTCAACCAGTACCACCTCATGGGGCAGACAGTAGGCA
CTGAGAACATCAGCACCAGCACAGGTGAATATACGATCATGACTGCTCACTTCCACCTGAAGAGGAAGAT
AGGCTACTTTGTCATCCAGACCTACCTTCCCTGCATCATGACTGTCATCTTATCCCAGGTGTCCTTTTGG
CTAAATCGAGAATCTGTCCCAGCTAGGACAGTTTTTGGAGTGACCACAGTGCTGACCATGACAACACTCA
GCATCAGTGCCCGGAATTCGCTGCCCAAAGTGGCCTATGCCACAGCCATGGACTGGTTCATTGCTGTCTG
CTATGCATTTGTCTTCTCTGCTCTGATTGAATTTGCCACAGTCAACTACTTTACAAAGAGAGGATGGGCC
TGGGATGGCAAGAAAGCCCTGGAAGCAGCTAAAATAAAGAAAAAAGAACGCGAACTCATACTAAATAAGT
CAACAAATGCTTTTACAACTGGAAAGCTGACCCATCCTCCAAACATCCCAAAAGAGCAGCCTCCAGCTGG
GACCGCGAATGCACCCACAGTCTCCATCAAAGCTTCTGAAGAGAAGACTGCGGAGAGTAAAAAGACATAC
AACAGCATCAGCAAGATCGACAAAATGTCCCGGATTGTGTTCCCCATCTTGTTTGGCACTTTCAACTTAG
TTTACTGGGCAACATATTTGAATAGAGAGCCCGTGATAAAAGGGGCCACCTCTCCAAAGTAA

Translation (463 aa):
MDNGMLSRFIMTQTLLVFCISMTLSSHFGFSQMPTSSVQDETNDNITIFTRILDGLLDGYDNRLRPGLGE
RITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKK
SIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGST
KSVVVAEDGSRLNQYHLMGQTVGTENISTSTGEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFW
LNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWA
WDGKKALEAAKIKKKERELILNKSTNAFTTGKLTHPPNIPKEQPPAGTANAPTVSIKASEEKTAESKKTY
NSISKIDKMSRIVFPILFGTFNLVYWATYLNREPVIKGATSPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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