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Report for CCDS22372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22372.1 Public Mus musculus 8 Ell 23 108 98 CCDS HistoryNCBI Gene:13716Re-query CCDS DB by CCDS ID:22372.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22372.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093454.7 ENSMUSP00000091163.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093454.7Link to Ensembl Protein Viewer:ENSMUSP00000091163.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000093454Re-query CCDS DB by Protein ID:ENSMUSP00000091163
Original member NCBI NM_007924.2 NP_031950.2 Updated not alive Link to Nucleotide Sequence:NM_007924.2Link to Protein Sequence:NP_031950.2Re-query CCDS DB by Nucleotide ID:NM_007924Re-query CCDS DB by Protein ID:NP_031950
Current member NCBI NM_007924.3 NP_031950.2 Accepted alive Link to Nucleotide Sequence:NM_007924.3Link to Protein Sequence:NP_031950.2Re-query CCDS DB by Nucleotide ID:NM_007924Re-query CCDS DB by Protein ID:NP_031950Link to BLAST:NP_031950.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031950.2 602 O08856 602 100% 0 0

Chromosomal Locations for CCDS 22372.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70539707 70539841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70572863 70572910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70578837 70578958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70579093 70579256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70581555 70581820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70583872 70583996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70585157 70585235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70585554 70586028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70590520 70590580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70590694 70590865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70591370 70591414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70591498 70591614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGCGGCGCTGAAGGAGGCTAGGAGTTACGGGTTGTCGTGTGGGCGCGTGAGCGACGGCAGCAGGGTGT
CGGTGTTCCACGTGAAGCTCACCGACAGTGCTTTGAAGGCTTTTGAAAGCTACCGGGCCCACCAGGATTC
TGTGTCACTGAGACCTTCCATCCGATTTGAAGGAAGCCAAGGGCACATCTCTATACCCCAGCCTGACTGC
CCAGAGGAGGTGCGGGCCTTCTCCTTCTACCTCTCCAATATTGGCCGCGACAGCCCTCAGGGCAGCTTTG
ATTGCATCCAACAATATGTATCCAGCTATGGGGATGTACACCTGGACTGCCTGGGCAGCATCCAGGACAA
GGTCACGGTGTGTGCTACTGATGACTCCTACCAGAAAGCACGACAGAGCATGGCACAGGCAGAGGAGGAG
ACTCGGAGCCGAAGTGCCATCGTCATTAAGGCTGGAGGCCGATACATGGGGAAAAAGGTTCAGTTTCGGA
AGCCAGCGCCAGGGGCAGCTGATGCAGTACCCTCCCGGAAGCGTGCTACCCCCATTAACCTGGCAAGTGC
CATCAGAAAGAGCAGTGGGAGTGGAGCCAGCAGTGTGGTACAGAGGCCCTTCCGAGATCGGGTGCTACAC
CTCCTGGCCCTGAGGCCCTACAGGAAGGCTGAGCTGCTGCTGCGGTTGCAGAAGGATGGGTTGACACAGG
CAGACAAGGACACCCTGGACAGCCTGCTGCAGCAGGTGGCCAGTGTGAACCCCAAGGATGGCACGTGCAC
GCTGCAGGACTGCATGTACAAAAGCCTGCAGAAGGACTGGCCCGGCTACTCTGAGGGGGACCGGCAGCTG
CTGAAGCGCATGCTCATGCGGAAGCTGTGTCAGCCACAGAATGCCACTACAGACTCCAGCCCGCCCCGAG
AGCATGGACGCTCTGCCTCACCCTCTCAGAAACGGCCTACAGACTTCATTGACCCCCTGGCCAGCAAGAA
GCCCCGGATCTCACATTTCACACAGCGAGCACAACCCACCCTCAATGGCAAACTGGGTGCCCCCAATGGC
CATGAGACACTGCTGCCTGCTCCAGGACCCACCCCATCAGACACCCTCAGCTCTAGCCATCTGCCCCCAC
GGCTGGAGCCCCCAAGGACCCACGACCCCCTAGCTGATGTCAGTAATGACCTAGGTCACAGTACCCAGGA
CTACAAGCACCAGGAAGCCACCCCAGCTCCAGCACCCCATCTTGGTCTTCCCCTGCTGACGGACTTTCCT
CAGGCTGAGCAACCTACTAGCTCCTCACACACCCACAGCCGACCCAAGAAGAAGTCCAAGAAGCACAAAG
ACAAGGAGCGGCCCCCTGAAGAAAGGCCCCCCGCCCCACAGCCTGATGCACCTACTGCCCCTGCACTACC
GCCAGATGCCCCAGGTCTGAATGGAGCCTGTGACAATGAACCCACATCCTCGTCAGAGACCCCGGACTAT
TTGCTGAAATACCCAGCCATCTCGTCGTCAGAGCAGCGTCAGAGCTACAAGAATGACTTCAATGCTGAGT
ACAGCGAGTACCGCAGTCTGCACGCGCGGATCGAGCAGATCACCCGCAGGTTCACCCAGCTTGACGCACA
GCTCAGACAGCTGAGCCAGGGCTCTGATGAGTACGAGACAACCCGTGGGCAAATTCTTCAGGAATACAGG
AAAATCAAAAAGACCAACACCAACTACAGCTGTGAGAAGCGACGCTGCGAATACCTGCACCGCAAGCTGG
CGCACATTAAGAGGCTCATCGCAGAGTATGACCAGCGGCAGCTTCAGGCCTGGCCCTAG

Translation (602 aa):
MAALKEARSYGLSCGRVSDGSRVSVFHVKLTDSALKAFESYRAHQDSVSLRPSIRFEGSQGHISIPQPDC
PEEVRAFSFYLSNIGRDSPQGSFDCIQQYVSSYGDVHLDCLGSIQDKVTVCATDDSYQKARQSMAQAEEE
TRSRSAIVIKAGGRYMGKKVQFRKPAPGAADAVPSRKRATPINLASAIRKSSGSGASSVVQRPFRDRVLH
LLALRPYRKAELLLRLQKDGLTQADKDTLDSLLQQVASVNPKDGTCTLQDCMYKSLQKDWPGYSEGDRQL
LKRMLMRKLCQPQNATTDSSPPREHGRSASPSQKRPTDFIDPLASKKPRISHFTQRAQPTLNGKLGAPNG
HETLLPAPGPTPSDTLSSSHLPPRLEPPRTHDPLADVSNDLGHSTQDYKHQEATPAPAPHLGLPLLTDFP
QAEQPTSSSHTHSRPKKKSKKHKDKERPPEERPPAPQPDAPTAPALPPDAPGLNGACDNEPTSSSETPDY
LLKYPAISSSEQRQSYKNDFNAEYSEYRSLHARIEQITRRFTQLDAQLRQLSQGSDEYETTRGQILQEYR
KIKKTNTNYSCEKRRCEYLHRKLAHIKRLIAEYDQRQLQAWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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