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Report for CCDS16477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16477.1 Public Mus musculus 2 Elf5 23 108 98 CCDS HistoryNCBI Gene:13711Re-query CCDS DB by CCDS ID:16477.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16477.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028609.13 ENSMUSP00000028609.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028609.13Link to Ensembl Protein Viewer:ENSMUSP00000028609.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028609Re-query CCDS DB by Protein ID:ENSMUSP00000028609
Original member Current member EBI ENSMUST00000164172.7 ENSMUSP00000126941.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164172.7Link to Ensembl Protein Viewer:ENSMUSP00000126941.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164172Re-query CCDS DB by Protein ID:ENSMUSP00000126941
Original member Current member EBI ENSMUST00000171693.7 ENSMUSP00000131940.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171693.7Link to Ensembl Protein Viewer:ENSMUSP00000131940.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171693Re-query CCDS DB by Protein ID:ENSMUSP00000131940
Original member Current member NCBI NM_001145813.1 NP_001139285.1 Accepted alive Link to Nucleotide Sequence:NM_001145813.1Link to Protein Sequence:NP_001139285.1Re-query CCDS DB by Nucleotide ID:NM_001145813Re-query CCDS DB by Protein ID:NP_001139285Link to BLAST:NP_001139285.1
Original member Current member NCBI NM_010125.3 NP_034255.2 Accepted alive Link to Nucleotide Sequence:NM_010125.3Link to Protein Sequence:NP_034255.2Re-query CCDS DB by Nucleotide ID:NM_010125Re-query CCDS DB by Protein ID:NP_034255Link to BLAST:NP_034255.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139285.1 253 Q8VDK3 253 100% 0 0
NP_034255.2 253 Q8VDK3 253 100% 0 0

Chromosomal Locations for CCDS 16477.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 103430293 103430413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103439197 103439430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103442801 103442851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103447432 103447494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103448905 103449100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103449564 103449660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGTTGGACTCCGTAACCCATAGCACCTTCCTGCCCAACGCATCCTTCTGTGACCCCCTGATGCCTTGGA
CCGATCTGTTCAGCAATGAAGACTACTACCCTGCCTTTGAGCATCAGACAGCCTGTGATTCCTACTGGAC
ATCAGTGCACCCTGAATACTGGACCAAGCGCCATGTCTGGGAATGGCTCCAATTCTGCTGCGACCAGTAC
AAGCTTGATGCCAACTGCATCTCCTTCTGTCACTTCAACATCAGCGGCCTGCAGCTCTGCAGCATGACGC
AGGAGGAGTTCATTGAGGCAGCCGGCATCTGTGGGGAGTACCTGTACTTCATTCTCCAGAACATTCGCTC
GCAAGGTTACTCCTTTTTCAATGATGCTGAAGAGACCAAGACTGGCATCAAAGACTATGCTGATTCCAGT
TGCTTGAAAACAAGTGGCATCAAGAGTCAAGACTGTCACAGCCGAACAAGCCTCCAAAGTTCTCACCTGT
GGGAATTTGTCAGAGACTTGCTGCTGTCCCCTGAAGAGAACTGTGGCATCCTGGAATGGGAAGACAGGGA
GCAGGGCATTTTCCGAGTGGTTAAGTCAGAAGCCCTGGCAAAGATGTGGGGACAAAGGAAGAAGAATGAC
AGGATGACGTACGAGAAGCTGAGCCGAGCCCTGAGATACTACTATAAAACGGGAATTCTGGAGCGGGTTG
ACCGGAGGTTAGTGTACAAATTTGGAAAGAACGCGCACGGGTGGCAGGAAGAGAAACTCTGA

Translation (253 aa):
MLDSVTHSTFLPNASFCDPLMPWTDLFSNEDYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQY
KLDANCISFCHFNISGLQLCSMTQEEFIEAAGICGEYLYFILQNIRSQGYSFFNDAEETKTGIKDYADSS
CLKTSGIKSQDCHSRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKND
RMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEEKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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