NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18884.1 Public Mus musculus 4 Cela2a 23 108 98 CCDS HistoryNCBI Gene:13706Re-query CCDS DB by CCDS ID:18884.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102481.3 ENSMUSP00000099539.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102481.3Link to Ensembl Protein Viewer:ENSMUSP00000099539.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102481Re-query CCDS DB by Protein ID:ENSMUSP00000099539
Original member Current member NCBI NM_007919.3 NP_031945.1 Accepted alive Link to Nucleotide Sequence:NM_007919.3Link to Protein Sequence:NP_031945.1Re-query CCDS DB by Nucleotide ID:NM_007919Re-query CCDS DB by Protein ID:NP_031945Link to BLAST:NP_031945.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031945.1 271 P05208 271 100% 0 0

Chromosomal Locations for CCDS 18884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141815038 141815055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141817865 141818017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141818982 141819127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141821325 141821461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141821702 141821830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141822230 141822327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141825530 141825624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141825943 141825982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGATCAGGACACTGCTGCTATCTGCCTTGGTGGCTGGAGCCCTCAGCTGTGGGTACCCCACTTATGAGG
TGGAGGATGATGTGAGCAGGGTAGTTGGGGGTCAAGAGGCCACACCCAACACCTGGCCCTGGCAGGTCTC
CCTGCAGGTCCTTTCCTCCGGAAGGTGGCGCCACAACTGCGGAGGCTCCCTGGTGGCCAACAACTGGGTT
CTGACAGCTGCCCATTGCCTCAGCAACTATCAGACCTACCGAGTGCTGCTGGGCGCACACAGCCTCTCCA
ACCCCGGAGCTGGCTCTGCTGCTGTTCAAGTCTCTAAGCTTGTGGTCCACCAGAGGTGGAACTCCCAAAA
CGTCGGCAATGGCTATGACATTGCCTTAATCAAACTGGCCAGCCCAGTGACCCTGAGCAAGAACATCCAG
ACAGCTTGCCTCCCACCCGCTGGCACCATTCTCCCGAGAAACTATGTCTGCTATGTCACAGGCTGGGGCC
TGCTGCAGACCAATGGGAACAGTCCTGACACCCTGAGGCAGGGCCGCCTGCTGGTTGTGGACTATGCCAC
CTGCTCCAGCGCTAGCTGGTGGGGAAGCTCTGTGAAGTCCAGCATGGTGTGCGCTGGTGGCGACGGCGTG
ACCTCCAGCTGCAATGGGGACTCTGGCGGACCACTGAATTGCCGGGCATCTAATGGCCAGTGGCAGGTGC
ATGGCATCGTGAGCTTCGGCTCCTCTCTGGGCTGCAACTACCCCCGCAAGCCATCCGTCTTCACCAGGGT
CTCCAACTACATTGACTGGATCAACTCGGTGATGGCAAGGAACTAA

Translation (271 aa):
MIRTLLLSALVAGALSCGYPTYEVEDDVSRVVGGQEATPNTWPWQVSLQVLSSGRWRHNCGGSLVANNWV
LTAAHCLSNYQTYRVLLGAHSLSNPGAGSAAVQVSKLVVHQRWNSQNVGNGYDIALIKLASPVTLSKNIQ
TACLPPAGTILPRNYVCYVTGWGLLQTNGNSPDTLRQGRLLVVDYATCSSASWWGSSVKSSMVCAGGDGV
TSSCNGDSGGPLNCRASNGQWQVHGIVSFGSSLGCNYPRKPSVFTRVSNYIDWINSVMARN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH