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Report for CCDS27317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27317.1 Public Mus musculus 14 Ednrb 23 108 98 CCDS HistoryNCBI Gene:13618Re-query CCDS DB by CCDS ID:27317.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022718.10 ENSMUSP00000022718.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022718.10Link to Ensembl Protein Viewer:ENSMUSP00000022718.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022718Re-query CCDS DB by Protein ID:ENSMUSP00000022718
Original member Current member EBI ENSMUST00000172237.1 ENSMUSP00000126057.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172237.1Link to Ensembl Protein Viewer:ENSMUSP00000126057.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172237Re-query CCDS DB by Protein ID:ENSMUSP00000126057
Original member Current member EBI ENSMUST00000227824.1 ENSMUSP00000154806.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227824.1Link to Ensembl Protein Viewer:ENSMUSP00000154806.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227824Re-query CCDS DB by Protein ID:ENSMUSP00000154806
Original member NCBI NM_001136061.2 NP_001129533.1 Updated not alive Link to Nucleotide Sequence:NM_001136061.2Link to Protein Sequence:NP_001129533.1Re-query CCDS DB by Nucleotide ID:NM_001136061Re-query CCDS DB by Protein ID:NP_001129533
Current member NCBI NM_001136061.3 NP_001129533.1 Accepted alive Link to Nucleotide Sequence:NM_001136061.3Link to Protein Sequence:NP_001129533.1Re-query CCDS DB by Nucleotide ID:NM_001136061Re-query CCDS DB by Protein ID:NP_001129533Link to BLAST:NP_001129533.1
Original member NCBI NM_001276296.1 NP_001263225.1 Updated not alive Link to Nucleotide Sequence:NM_001276296.1Link to Protein Sequence:NP_001263225.1Re-query CCDS DB by Nucleotide ID:NM_001276296Re-query CCDS DB by Protein ID:NP_001263225
Current member NCBI NM_001276296.2 NP_001263225.1 Accepted alive Link to Nucleotide Sequence:NM_001276296.2Link to Protein Sequence:NP_001263225.1Re-query CCDS DB by Nucleotide ID:NM_001276296Re-query CCDS DB by Protein ID:NP_001263225Link to BLAST:NP_001263225.1
Original member NCBI NM_007904.4 NP_031930.1 Updated not alive Link to Nucleotide Sequence:NM_007904.4Link to Protein Sequence:NP_031930.1Re-query CCDS DB by Nucleotide ID:NM_007904Re-query CCDS DB by Protein ID:NP_031930
Current member NCBI NM_007904.5 NP_031930.1 Accepted alive Link to Nucleotide Sequence:NM_007904.5Link to Protein Sequence:NP_031930.1Re-query CCDS DB by Nucleotide ID:NM_007904Re-query CCDS DB by Protein ID:NP_031930Link to BLAST:NP_031930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129533.1 442 P48302 442 100% 0 0
NP_001263225.1 442 P48302 442 100% 0 0
NP_031930.1 442 P48302 442 100% 0 0

Chromosomal Locations for CCDS 27317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 103817066 103817200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103819931 103820039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103820781 103820914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103821638 103821787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103823055 103823259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103823392 103823504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103842994 103843476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGCAATCGCCCGCAAGCCGGTGCGGACGCGCCTTGGTGGCGCTGCTGCTGGCCTGTGGCTTCTTGGGGG
TATGGGGAGAGAAAAGAGGATTCCCACCTGCCCAAGCCACGCTGTCACTTCTCGGGACTAAAGAGGTAAT
GACGCCACCCACTAAGACCTCCTGGACCAGAGGTTCCAACTCCAGTCTGATGCGTTCCTCCGCACCTGCG
GAGGTGACCAAAGGAGGGAGGGGGGCTGGAGTCCCGCCAAGATCCTTCCCTCCTCCGTGCCAACGAAATA
TTGAGATCAGCAAGACTTTTAAATACATCAACACGATTGTGTCGTGCCTCGTGTTCGTGCTAGGCATCAT
CGGGAACTCCACGCTGCTAAGAATCATCTACAAGAACAAGTGCATGCGCAATGGTCCCAATATCTTGATC
GCCAGTCTGGCTCTGGGAGACCTACTGCACATCATCATAGACATACCCATTAACACCTACAAGTTGCTCG
CAGAGGACTGGCCATTTGGAGCTGAGATGTGTAAGCTGGTGCCCTTCATACAGAAGGCTTCTGTGGGAAT
CACAGTGCTGAGTCTTTGTGCTCTAAGTATTGACAGATATCGAGCTGTTGCTTCTTGGAGTCGAATTAAA
GGAATTGGGGTTCCAAAATGGACAGCAGTAGAAATTGTTTTAATTTGGGTGGTCTCTGTGGTTCTGGCTG
TCCCCGAAGCCATAGGTTTTGATATGATTACGTCGGACTACAAAGGAAAGCCCCTAAGGGTCTGCATGCT
TAATCCCTTTCAGAAAACAGCCTTCATGCAGTTTTACAAGACAGCCAAAGATTGGTGGCTGTTCAGTTTC
TACTTCTGCTTGCCGCTAGCCATCACTGCAGTCTTTTATACCCTGATGACCTGCGAAATGCTCAGGAAGA
AGAGCGGTATGCAGATTGCTTTGAATGATCACTTAAAGCAGAGACGAGAAGTGGCCAAGACAGTCTTCTG
CCTGGTCCTCGTGTTTGCTCTCTGTTGGCTTCCCCTTCACCTCAGCCGGATCCTGAAGCTCACCCTGTAT
GACCAGAGCAATCCACACAGGTGTGAGCTTCTGAGCTTTTTGTTGGTTTTGGACTACATTGGTATCAACA
TGGCTTCTTTGAACTCCTGCATCAATCCAATCGCTCTGTATTTGGTGAGCAAAAGATTCAAAAACTGCTT
TAAGTCATGTTTGTGCTGCTGGTGCCAAACGTTTGAGGAAAAGCAGTCCTTGGAGGAGAAGCAGTCCTGC
CTGAAGTTCAAAGCCAACGATCACGGATATGACAACTTCCGGTCCAGCAATAAATACAGCTCGTCTTGA

Translation (442 aa):
MQSPASRCGRALVALLLACGFLGVWGEKRGFPPAQATLSLLGTKEVMTPPTKTSWTRGSNSSLMRSSAPA
EVTKGGRGAGVPPRSFPPPCQRNIEISKTFKYINTIVSCLVFVLGIIGNSTLLRIIYKNKCMRNGPNILI
ASLALGDLLHIIIDIPINTYKLLAEDWPFGAEMCKLVPFIQKASVGITVLSLCALSIDRYRAVASWSRIK
GIGVPKWTAVEIVLIWVVSVVLAVPEAIGFDMITSDYKGKPLRVCMLNPFQKTAFMQFYKTAKDWWLFSF
YFCLPLAITAVFYTLMTCEMLRKKSGMQIALNDHLKQRREVAKTVFCLVLVFALCWLPLHLSRILKLTLY
DQSNPHRCELLSFLLVLDYIGINMASLNSCINPIALYLVSKRFKNCFKSCLCCWCQTFEEKQSLEEKQSC
LKFKANDHGYDNFRSSNKYSSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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