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Report for CCDS20271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20271.1 Public Mus musculus 6 Lbx2 23 108 98 CCDS HistoryNCBI Gene:16815Re-query CCDS DB by CCDS ID:20271.1Re-query CCDS DB by GeneID:16815See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041265.3 ENSMUSP00000047134.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041265.3Link to Ensembl Protein Viewer:ENSMUSP00000047134.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000041265Re-query CCDS DB by Protein ID:ENSMUSP00000047134
Original member Current member NCBI NM_010692.4 NP_034822.1 Accepted alive Link to Nucleotide Sequence:NM_010692.4Link to Protein Sequence:NP_034822.1Re-query CCDS DB by Nucleotide ID:NM_010692Re-query CCDS DB by Protein ID:NP_034822Link to BLAST:NP_034822.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034822.1 195 Q9WUN8 195 100% 0 0

Chromosomal Locations for CCDS 20271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83086424 83086622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83087683 83088071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGAACTCTGTACATCAGCGCCGGACACCCTTTAGTATCGCAGACATCCTAGGTCCGAGCATGGTCCCCG
AAGCACCTTCTGCACCGCAGCTTCCCGAGGCCGGCCCTGATCCCGCGTCACCACTGTGTGCGCTGGAGGA
GCTAGCAAGTAAAACTTTCCTGGGCCATTCCCCGCGGGCTACACCACAGCCTTCTGAAGGCAGAGCCGCC
CCGGAGGCGCCGCCGGGGCCTGGCGCTGGTGTCCGGAGACGCCGCAAGTCTCGGACAGCGTTCACTGCAC
AGCAGGTGCTGGAGCTGGAGCGGCGATTCGTCTTCCAGAAGTACTTGGCACCGTCAGAGCGCGACGGACT
TGCTGCGCGACTGGGCCTGGCTAATGCGCAAGTGGTCACTTGGTTCCAGAACCGTCGCGCCAAGCTCAAG
CGGGATGTGGAGGAGATGCGCGCGGACGTGGCCTCCCTATGCGGGTTGTCCCCTGGAGTCCTGTGTTACC
CAGCACTGCCAGACAGCACTTCAAGCCCTGACCCTGGCCCTTCAGGGCCCGATTCTGAGCCCAACTTATC
AGATGAGGAGATACAGGTGGACGATTGA

Translation (195 aa):
MNSVHQRRTPFSIADILGPSMVPEAPSAPQLPEAGPDPASPLCALEELASKTFLGHSPRATPQPSEGRAA
PEAPPGPGAGVRRRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGLAARLGLANAQVVTWFQNRRAKLK
RDVEEMRADVASLCGLSPGVLCYPALPDSTSSPDPGPSGPDSEPNLSDEEIQVDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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