NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24944.1 Public Mus musculus 11 Alox15 23 108 98 CCDS HistoryNCBI Gene:11687Re-query CCDS DB by CCDS ID:24944.1Re-query CCDS DB by GeneID:11687See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24944.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019068.6 ENSMUSP00000019068.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019068.6Link to Ensembl Protein Viewer:ENSMUSP00000019068.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000019068Re-query CCDS DB by Protein ID:ENSMUSP00000019068
Original member Current member NCBI NM_009660.3 NP_033790.3 Accepted alive Link to Nucleotide Sequence:NM_009660.3Link to Protein Sequence:NP_033790.3Re-query CCDS DB by Nucleotide ID:NM_009660Re-query CCDS DB by Protein ID:NP_033790Link to BLAST:NP_033790.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033790.3 663 P39654 663 100% 0 0

Chromosomal Locations for CCDS 24944.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70344543 70344722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70344820 70344987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70345096 70345196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70345530 70345651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70345817 70345986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70346080 70346166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70347087 70347296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70348089 70348232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70349544 70349704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70349904 70350007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70350129 70350251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70350325 70350406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70350714 70350918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70351871 70352005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGGGTGTCTACCGCATCCGCGTCTCCACCGGGGACTCCGTGTACGCGGGCTCCAACAACGAGGTCTACC
TGTGGTTGATCGGACAGCATGGGGAGGCATCTCTCGGGAAGCTGTTCCGACCCTGTCGGAACTCGGAGGC
AGAATTCAAGGTGGATGTGTCAGAATACCTTGGGCCACTGCTGTTTGTGAGAGTGCAGAAATGGCATTAT
CTCAAAGAGGACGCCTGGTTCTGCAACTGGATTTCTGTGAAGGGCCCCGGAGACCAGGGATCGGAGTACA
CGTTCCCCTGTTACCGATGGGTTCAGGGCACCAGCATCCTGAACCTCCCTGAGGGCACTGGCTGCACCGT
GGTTGAAGACTCTCAAGGCCTGTTCAGGAACCACAGGGAGGAGGAACTGGAAGAAAGGAGGAGTCTGTAC
AGGTGGGGCAACTGGAAGGATGGCACAATCCTGAACGTGGCGGCGACCAGTATCTCTGACCTCCCTGTAG
ACCAGCGATTTCGAGAGGACAAAAGACTTGAATTTGAAGCTTCACAGGTTCTGGGGACAATGGACACCGT
TATTAACTTCCCTAAAAACACTGTGACCTGCTGGAAAAGCCTAGATGACTTCAACTATGTTTTCAAGAGT
GGCCACACCAAGATGGCTGAGCGGGTTCGAAACTCCTGGAAAGAGGATGCTTTCTTTGGGTACCAGTTTC
TCAATGGTGCTAACCCCATGGTGCTGAAGCGGTCTACTTGTCTCCCTGCCCGCCTGGTATTCCCTCCGGG
GATGGAGAAGCTACAGGCCCAGCTGGATGAGGAGCTCAAGAAAGGCACTCTGTTTGAAGCGGATTTCTTC
CTTCTGGATGGGATCAAGGCCAATGTCATCCTTTGTAGTCAGCAGTACCTGGCTGCCCCCCTCGTCATGC
TGAAGCTGCAGCCCGATGGGCAACTCTTGCCTATAGCCATCCAGCTCGAACTGCCCAAAACTGGGTCTAC
CCCACCGCCGATTTTCACGCCCTTGGATCCCCCAATGGACTGGCTCCTGGCCAAATGCTGGGTCCGAAGC
TCAGACTTACAGCTTCATGAGCTACAGGCTCATCTTCTGAGGGGACACTTGGTGGCTGAGGTCTTTGCTG
TGGCCACCATGAGGTGCCTGCCTTCCGTGCACCCTGTTTTTAAGCTTCTAGTTCCTCACCTACTCTACAC
CATGGAAATCAATGTCCGGGCCAGGAGCGACCTGATCTCAGAGAGAGGCTTTTTTGACAAGGTGATGAGC
ACAGGTGGAGGAGGCCACCTGGATCTTCTCAAGCAAGCTGGAGCCTTCCTGACCTACAGCTCATTGTGTC
CCCCTGATGACTTGGCTGAGCGAGGACTCCTGGATATTGACACTTGCTTCTATGCTAAAGATGCCCTGCA
GCTCTGGCAAGTCATGAATCGGTACGTGGTGGGAATGTTCGATCTCTACTACAAGACCGACCAAGCTGTT
CAGGATGACTATGAACTGCAGAGCTGGTGTCAAGAGATCACTGAGATTGGGTTGCAAGGTGCCCAGGACA
GAGGCTTCCCCACCTCCCTCCAGTCCCGGGCTCAGGCTTGCCACTTCATCACCATGTGCATCTTCACATG
CACTGCGCAGCACTCTTCCATCCATCTTGGCCAGCTGGATTGGTTCTACTGGGTTCCTAATGCACCCTGC
ACCATGCGGCTGCCACCACCTAAAACCAAGGACGCGACGATGGAGAAGCTGATGGCGACGCTGCCCAATC
CTAATCAGTCTACTCTCCAGATAAATGTCGTTTGGCTCCTGGGCAGACGCCAGGCTGTTATGGTGCCCCT
GGGCCAGCATTCAGAGGAACACTTCCCAAACCCTGAGGCCAAAGCTGTGCTGAAGAAGTTCAGAGAGGAG
CTGGCTGCCTTGGATAAGGAAATTGAGATTCGTAACAAGAGCTTGGACATACCTTATGAGTACCTGCGGC
CCAGCCTGGTAGAAAACAGCGTGGCCATATGA

Translation (663 aa):
MGVYRIRVSTGDSVYAGSNNEVYLWLIGQHGEASLGKLFRPCRNSEAEFKVDVSEYLGPLLFVRVQKWHY
LKEDAWFCNWISVKGPGDQGSEYTFPCYRWVQGTSILNLPEGTGCTVVEDSQGLFRNHREEELEERRSLY
RWGNWKDGTILNVAATSISDLPVDQRFREDKRLEFEASQVLGTMDTVINFPKNTVTCWKSLDDFNYVFKS
GHTKMAERVRNSWKEDAFFGYQFLNGANPMVLKRSTCLPARLVFPPGMEKLQAQLDEELKKGTLFEADFF
LLDGIKANVILCSQQYLAAPLVMLKLQPDGQLLPIAIQLELPKTGSTPPPIFTPLDPPMDWLLAKCWVRS
SDLQLHELQAHLLRGHLVAEVFAVATMRCLPSVHPVFKLLVPHLLYTMEINVRARSDLISERGFFDKVMS
TGGGGHLDLLKQAGAFLTYSSLCPPDDLAERGLLDIDTCFYAKDALQLWQVMNRYVVGMFDLYYKTDQAV
QDDYELQSWCQEITEIGLQGAQDRGFPTSLQSRAQACHFITMCIFTCTAQHSSIHLGQLDWFYWVPNAPC
TMRLPPPKTKDATMEKLMATLPNPNQSTLQINVVWLLGRRQAVMVPLGQHSEEHFPNPEAKAVLKKFREE
LAALDKEIEIRNKSLDIPYEYLRPSLVENSVAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH