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Report for CCDS21591.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21591.1 Public Mus musculus 7 Or52a5 23 108 98 CCDS HistoryNCBI Gene:18369Re-query CCDS DB by CCDS ID:21591.1Re-query CCDS DB by GeneID:18369See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21591.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072513.3 ENSMUSP00000072329.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072513.3Link to Ensembl Protein Viewer:ENSMUSP00000072329.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000072513Re-query CCDS DB by Protein ID:ENSMUSP00000072329
Original member Current member EBI ENSMUST00000216811.1 ENSMUSP00000150493.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216811.1Link to Ensembl Protein Viewer:ENSMUSP00000150493.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216811Re-query CCDS DB by Protein ID:ENSMUSP00000150493
Original member Current member NCBI NM_013620.2 NP_038648.2 Accepted alive Link to Nucleotide Sequence:NM_013620.2Link to Protein Sequence:NP_038648.2Re-query CCDS DB by Nucleotide ID:NM_013620Re-query CCDS DB by Protein ID:NP_038648Link to BLAST:NP_038648.2

Chromosomal Locations for CCDS 21591.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103777396 103778343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGATCAAGTTCAATGGCTCAGTCTTCATGCCTTCTGTGTTAACACTAGTGGGGATCCCTGGCCTGGAGT
CAGTGCAGTGCTGGATTGGAATTCCATTCTGTGTCATGTACATCATTGCTATGATTGGGAACTCCCTAAT
TTTAGTTATAATCAAAAGTGAAAAGAGCCTCCACATACCCATGTACATTTTCTTGGCTATTTTGGCAGTC
ACAGACATTGCCCTTAGCACATGCATTCTTCCCAAAATGTTGGGCATCTTCTGGTTTCACATGCCACAGA
TTTTCTTTGATGCCTGCCTGCTGCAGATGGAACTCATCCACTCATTCCAGGCCACAGAATCAGGCATCCT
CCTGGCCATGGCTCTGGATCGCTATGTGGCTATCTGCAACCCCCTCAGACATGCTACTATCTTCTCTCCA
CAACTCACCACTTGCCTTGGAGCTGGTGCATTACTCAGGGCTTTCATTCTTGTATCCCCATCCATACTAC
TCATCAAATGTCGCCTTAAGTACTTTCAAACTACCATTATCTCCCACTCGTACTGTGAACACATGGCCAT
TGTGAAACTGGCAGCTCAAGATATCAGAATCAACAAGATATGTGGCCTCCTTGTTGCCTTTGCCATCTTA
GGGTTTGACATAGTCTTCATTACCTTCTCCTATGTGCGAATCTTCATCACAGTCTTCCAGCTGCCCCAGA
AGGAGGCTCGATTCAAAGCCTTCAATACCTGCATTGCTCACATCTGTGTCTTCCTGCAGTTCTACCTTCT
GGCCTTCTTCTCTTTCTTCACACACAGGTTTGGGGCTCACATACCCCCCTATGTGCACATCCTCCTGTCA
GACCTTTACCTGTTAGTCCCACCTTTTCTGAACCCCATTGTTTATGGTGTTAAAACTAAACAAATCCGTG
ACCAAGTCCTGAAAATGCTATTCTCCAAGAAACATTAG

Translation (315 aa):
MIKFNGSVFMPSVLTLVGIPGLESVQCWIGIPFCVMYIIAMIGNSLILVIIKSEKSLHIPMYIFLAILAV
TDIALSTCILPKMLGIFWFHMPQIFFDACLLQMELIHSFQATESGILLAMALDRYVAICNPLRHATIFSP
QLTTCLGAGALLRAFILVSPSILLIKCRLKYFQTTIISHSYCEHMAIVKLAAQDIRINKICGLLVAFAIL
GFDIVFITFSYVRIFITVFQLPQKEARFKAFNTCIAHICVFLQFYLLAFFSFFTHRFGAHIPPYVHILLS
DLYLLVPPFLNPIVYGVKTKQIRDQVLKMLFSKKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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