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Report for CCDS14906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14906.1 Public Mus musculus 1 Cnot11 23 108 98 CCDS HistoryNCBI Gene:52846Re-query CCDS DB by CCDS ID:14906.1Re-query CCDS DB by GeneID:52846See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14906.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003219.13 ENSMUSP00000003219.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003219.13Link to Ensembl Protein Viewer:ENSMUSP00000003219.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003219Re-query CCDS DB by Protein ID:ENSMUSP00000003219
Original member Current member EBI ENSMUST00000161515.7 ENSMUSP00000125638.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161515.7Link to Ensembl Protein Viewer:ENSMUSP00000125638.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161515Re-query CCDS DB by Protein ID:ENSMUSP00000125638
Original member Current member NCBI NM_028043.3 NP_082319.1 Accepted alive Link to Nucleotide Sequence:NM_028043.3Link to Protein Sequence:NP_082319.1Re-query CCDS DB by Nucleotide ID:NM_028043Re-query CCDS DB by Protein ID:NP_082319Link to BLAST:NP_082319.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082319.1 505 Q9CWN7 505 100% 0 0

Chromosomal Locations for CCDS 14906.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 39535839 39536337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39537416 39537580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39538271 39538423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39539873 39540075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39542400 39542602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39544892 39544988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39545069 39545266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGCCCGGCGGCGGGGCGAGCACGGCGTCTGGCCGGCTTCTCTCCTCAGCGGATCCCAGAGGGGCGCGGG
AGGCAGCGGCGTTCCGGAGCGGCCCGGCGGGCTCGAGCGGAGGCCGAGGCGGAGCAGGCGGCCCTGGGCC
AGGGATTGGAGGCCCCGCGGGCAGGATGAGCCTGACCCCGAAGGAGCTCTCGAGCCTGCTGAGCATCATC
TCGGAGGAGGCGGGCGGCGGCAGCACCTTCGAGGGCCTGTCCACCGCCTTCCACCACTACTTCAGCAAGG
CCGACCACTTCCGCCTGGGCTCGGTGCTGGTGATGCTGCTGCAGCAGCCGGACCTGCTGCCTAGCGCGGC
GCAGCGCCTCACGGCGCTCTACCTGCTCTGGGAGATGTACCGCACCGAGCCGCTCGCCGCCAACCCGTTC
GCGGCCAGCTTCGCGCACCTGCTCAACCCGGCGCCGCCCGCCCGCGGCGGCCAGGAGCCCGACCGGCCCC
CGCTCTCAGGGTTCCTGCCTCCTATAACTCCACCAGAAAAGTTTTTCCTCTCCCAGCTCATGCTGGCACC
CCCAAGGGAACTGTTCAAAAAGACACCTCGCCAGATTGCCTTGATGGACGTTGGAAACATGGGACAGTCT
GTGGACATTAGCGGCCTTCAGTTAGCCCTGGCAGAGCGTCAGTCTGAGCTGCCAACCCAGAGCAAAGCCA
GCTTCCCAAGCATCCTCAGTGACCCAGACCCGGACTCGTCCAACTCTGGATTTGACAGCTCAGTTGCCTC
TCGGATCACAGAGTCTTTAGTCAGTGGCCCAAAGCCACCTATTGAAAGCCACTTTCGACCAGAGTTTATC
CGCCCACCACCCCCTCTCCACATCTGTGAGGATGAACTGGCCTGGCTAAATCCCACAGAACCCGAGCATG
CCATCCAGTGGGACAGATCGATGTGTGTGAAGAATAGCACTGGTGTGGAGATCAAGCGGATCATGGCGAA
AGCCTTCAAAAGCCCCCTGTCGTCTCCCCAACAGACACAGCTCCTCGGTGAGTTGGAAAAAGATCCCAAA
CTTGTTTATCACATTGGCCTTACTCCAGCGAAACTTCCAGATCTAGTGGAGAACAACCCTTTAGTCGCTA
TAGAAATGCTGCTGAAACTGATGCAGTCAAGCCAGATCACGGAGTATTTCTCTGTCCTGGTCAACATGGA
CATGTCCTTACATTCAATGGAAGTTGTAAATCGACTAACTACAGCTGTTGACCTACCTCCTGAATTTATT
CACCTATACATATCCAATTGCATTTCTACTTGTGAACAGATTAAGGATAAATATATGCAGAATCGTTTGG
TGCGTCTTGTGTGTGTGTTTCTCCAGTCTTTGATCCGTAACAAAATTATTAACGTGCAGGACTTGTTTAT
AGAAGTGCAGGCCTTCTGCATTGAATTTAGTAGGATACGGGAAGCTGCAGGCCTATTCCGGTTGCTGAAG
ACACTGGATACTGGGGAAACGCCTTCAGAGACCAAAATATCAAAATAA

Translation (505 aa):
MPGGGASTASGRLLSSADPRGAREAAAFRSGPAGSSGGRGGAGGPGPGIGGPAGRMSLTPKELSSLLSII
SEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANPF
AASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQS
VDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASRITESLVSGPKPPIESHFRPEFI
RPPPPLHICEDELAWLNPTEPEHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPK
LVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFI
HLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLK
TLDTGETPSETKISK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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