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Report for CCDS26627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26627.1 Public Mus musculus 13 Irx1 23 108 98 CCDS HistoryNCBI Gene:16371Re-query CCDS DB by CCDS ID:26627.1Re-query CCDS DB by GeneID:16371See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077337.8 ENSMUSP00000076562.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077337.8Link to Ensembl Protein Viewer:ENSMUSP00000076562.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000077337Re-query CCDS DB by Protein ID:ENSMUSP00000076562
Original member Current member NCBI NM_010573.2 NP_034703.2 Accepted alive Link to Nucleotide Sequence:NM_010573.2Link to Protein Sequence:NP_034703.2Re-query CCDS DB by Nucleotide ID:NM_010573Re-query CCDS DB by Protein ID:NP_034703Link to BLAST:NP_034703.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034703.2 480 P81068 480 100% 0 0

Chromosomal Locations for CCDS 26627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 71958616 71958673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 71958901 71958973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 71959250 71960285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 71963213 71963488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGTCCTTCCCGCAGCTGGGCTACCCGCAATACCTAAGCGCCGCGGGCCCGGGCGCCTATGGTGGAGAGC
GC
CCTGGGGTGCTGGCTGCGGCCGCGGCTGCTGCGGCCGCCGCCTCGTCGGGCCGTCCCGGGACTGCGGA
G
CTGGGAGCGGGCGCGGGAGCGGCCGCGGTCACCTCGGTGCTAGGCATGTATGCCGCGGCGGGACCGTAC
GCG
GGCGCACCCAACTACAGCGCCTTCTTGCCCTATGCCGCGGACCTCAGCCTCTTCTCGCAGATGGGCT
CT
CAGTATGAACTGAAGGACAACCCCGGGGTGCACCCAGCGACCTTCGCAGCCCACACAACGCCTGCTTA
T
TATCCCTATGGTCAGTTTCAATACGGGGATCCCGGACGGCCCAAGAACGCCACGCGGGAGAGCACCAGC
ACG
CTGAAAGCCTGGCTCAACGAACACCGCAAGAACCCGTACCCCACCAAAGGAGAGAAGATTATGCTGG
CC
ATTATCACCAAGATGACCCTCACACAGGTCTCCACCTGGTTCGCCAATGCGCGCCGGCGCCTCAAGAA
G
GAGAACAAGGTGACTTGGGGGGCGCGCAGCAAGGACCAGGAAGACGGCGCCCTCTTTGGCAGCGACACC
GAG
GGCGACCCCGAGAAGGCCGAGGACGACGAGGAGATCGACCTGGAGAGCATTGACATCGATCAGATCG
AC
GAGCGTGATGGCGACCAGAGCAACGAAGACGAAGAGGACAAGGCGGAGGCTCCTAGGGCGCGCGTAGC
C
CCTCCCGCCTCAGCTCGGGACCAGAGCTCCCCATTGTCGGCTGCTGAGACACTCAAGTCTCAAGATTCG
CCC
TTGGGCCTGGTTAAGGAGGTCTCAGAGCCCGGCAGCACACGCCTGCTGAGTCCTGGCGCCGCGGCGG
TC
GGCCTGCAGGGCGCGCCGCACAGCAAGCCCAAGATCTGGTCTCTGGCTGAGACAGCCACTAGCCCCGA
T
GGTGCGCCTAAGGCGTCTCCACCGCCACCCTCAAGCCACGCCAGCGCACACGGGCCGCCCAGCGGCTCA
CCC
CTGCAACACCCGGCCTTTCTACCCAGCCACGGACTGTACACCTGTCACATAGGCAAGTTTTCCAACT
GG
ACCAACGGCGCGTTCCTAGCACAGGGCTCGCTGCTGAACATGCGATCTTTCCTGGGCGTCAGCGCGCC
G
CATGCAGCACCTCACGGCCCACACCTGACAGCACCACCACCTCCACAGCCGCCAGTCCAGGTTGCCACC
GGG
GTGCTCCATGGTGAGAAGGCCTCCGCACGCAGCAGTCCTGCACTTCCAGAGAGAGACCTAGTCACCA
GA
CCGGATTCGCCCCCACAACAGTTAAAGTCGCCCTTCCAGCCGGTGCGCGACAACTCGCTGGCCCCGCA
G
GAGGGAACGCCTCGGATCCTCGCAGCCCTCCCGTCTGCCTGA


Translation (480 aa):
MSFPQLGYPQYLSAAGPGAYGGERPGVLAAAAAAAAAASSGRPGTAELGAGAGAAAVTSVLGMYAAAGPY
A
GAPNYSAFLPYAADLSLFSQM
GSQYELKDNPGVHPATFAAHTTPAYYPYGQFQYGDPGRPKNATRESTS
T
LKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKVTWGARSKDQEDGALFGSDT
E
GDPEKAEDDEEIDLESIDIDQIDERDGDQSNEDEEDKAEAPRARVAPPASARDQSSPLSAAETLKSQDS
P
LGLVKEVSEPGSTRLLSPGAAAVGLQGAPHSKPKIWSLAETATSPDGAPKASPPPPSSHASAHGPPSGS
P
LQHPAFLPSHGLYTCHIGKFSNWTNGAFLAQGSLLNMRSFLGVSAPHAAPHGPHLTAPPPPQPPVQVAT
G
VLHGEKASARSSPALP
ERDLVTRPDSPPQQLKSPFQPVRDNSLAPQEGTPRILAALPSA



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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