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Report for CCDS15953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15953.1 Public Mus musculus 2 Psmd5 23 108 98 CCDS HistoryNCBI Gene:66998Re-query CCDS DB by CCDS ID:15953.1Re-query CCDS DB by GeneID:66998See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15953.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028225.11 ENSMUSP00000028225.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028225.11Link to Ensembl Protein Viewer:ENSMUSP00000028225.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028225Re-query CCDS DB by Protein ID:ENSMUSP00000028225
Original member Current member NCBI NM_080554.2 NP_542121.2 Accepted alive Link to Nucleotide Sequence:NM_080554.2Link to Protein Sequence:NP_542121.2Re-query CCDS DB by Nucleotide ID:NM_080554Re-query CCDS DB by Protein ID:NP_542121Link to BLAST:NP_542121.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542121.2 504 Q8BJY1 504 100% 0 0

Chromosomal Locations for CCDS 15953.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 34852576 34852833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34854252 34854392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34856448 34856557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34857638 34857829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34860632 34860774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34863457 34863566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34865527 34865655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34865982 34866095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34866893 34867037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34870750 34870922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGCGGCGCAGGCTGTGTCGCTCCTGCGGGAGGTGGCGCGGCTGGAGGCGCCGCTGGAGGAGCTTCGTG
CGCTGCAGTCAGTGGTGCAGGCTGTGCCGCTGCACGAGCTTCGCGAGCAGGCGGCGGAGCTACGCCTCCG
CCCGCTGTTCTCCTTGCTTAACCAGAACAATCGGGAACAGACTGCTTTGTGTGTCTCCATTCTGGAGAGG
CTGCTCCAAGCTGTGGAGCCGATTCACTTGGCCAGGAACCTCAGGCTTGACCTGCAGAGGGGACTGACTC
ACCCTGATGACTCTGTAAAAACCCTCACTCTGTCGCAGATTGGAAGAATTGTTGAAAATTCAGAAGCTGT
TACTGAGATTCTCAATAATGCTGAGCTGTTGAAACAGATTGTTTATTGCATTGGCGGAGAGAATTTATCT
GTTGCTAAAGCGGCTATTAAATCCCTGTCGAGAATATCACTAACCCAGGCTGGCCTGGAAGCTCTGTTTG
AAAGTAACCTGCTGGATGATTTGAAGAATGTAATGAAAACAAACGACGTTGTTCGATACAGGGTCTATGA
GCTAATTATAGATATTTCTTCTGTGTCATCAGAATCTTTAAACTACTGTACCACAAGTGGACTGGTGACT
CAACTCCTAAAAGAGCTGACGGGTGAGGACGTGTTAGTCAGAGCCACCTGTATAGAAATGGTGACATCAC
TAGCTTATACCCATCACGGACGACAATACCTTGCTCAAGAAGGAGTCATTGACCAGATATCCAATATAAT
TGTTGGCGCAGATTCAGACCCTTTCTCTGGCTTCTATCTGCCAGGATTTGTGAAGTTTTTTGGAAACCTG
GCCGTCATGGATAGTCCTCAGCAGATCTGTGAGCGCTACCCTGTTTTTCTGGAGAAGGTGTTTGAAATGG
CGGATAGTCAAGACCCCACCATGATTGGTGTCGCTGTCGACACAGTTGGAATCCTGGGATCCAGTGTTGA
AGGAAAACAAGTTTTACAGAAGACAGGAACCCGCTTTGAACGTGTCCTCATGAGAGTAGGATATCAAGCA
AAGAATGCTTCCACGGAGCTGAAGATTAGGTGCTTGGATGCAGTTTCCTCTCTCCTGTATTTATCGCCTG
AGCAGCAGACTGATGACTTCCTGGGAATGACAGAATCCTGGTTTTCCTCCATGTCTCGAGACTCCCTGGA
GCTTTTCCGTGGTATCAGTAACCAGCCCTTCCCGGAGCTACACTGTGCTGCCTTGAAAGTTTTCACAGCT
ATTGCAGACCAGCCCTGGGCTCAGAGACTTATGTTTAACAGTCCAGGTTTTGTAGAGTTTGTGATGGACC
GGTCTGTGGAACATGACAAAGCTTCAAAGGATGCCAAATATGAACTGGTAAAAGCACTTGCCAATTCCAA
GACAGTTGCAGAGATCTTTGGGAACTCAAATTATTTGAGGCTCAGAGCGTACCTAAGTGAAGGTCCATAC
TATGTGAAACCTGTTGCCACAACAGCAGTAGAAGGGGCTGACTGA

Translation (504 aa):
MAAQAVSLLREVARLEAPLEELRALQSVVQAVPLHELREQAAELRLRPLFSLLNQNNREQTALCVSILER
LLQAVEPIHLARNLRLDLQRGLTHPDDSVKTLTLSQIGRIVENSEAVTEILNNAELLKQIVYCIGGENLS
VAKAAIKSLSRISLTQAGLEALFESNLLDDLKNVMKTNDVVRYRVYELIIDISSVSSESLNYCTTSGLVT
QLLKELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSGFYLPGFVKFFGNL
AVMDSPQQICERYPVFLEKVFEMADSQDPTMIGVAVDTVGILGSSVEGKQVLQKTGTRFERVLMRVGYQA
KNASTELKIRCLDAVSSLLYLSPEQQTDDFLGMTESWFSSMSRDSLELFRGISNQPFPELHCAALKVFTA
IADQPWAQRLMFNSPGFVEFVMDRSVEHDKASKDAKYELVKALANSKTVAEIFGNSNYLRLRAYLSEGPY
YVKPVATTAVEGAD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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