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Report for CCDS24827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24827.1 Public Mus musculus 11 Trpv2 23 108 98 CCDS HistoryNCBI Gene:22368Re-query CCDS DB by CCDS ID:24827.1Re-query CCDS DB by GeneID:22368See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24827.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018651.13 ENSMUSP00000018651.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018651.13Link to Ensembl Protein Viewer:ENSMUSP00000018651.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000018651Re-query CCDS DB by Protein ID:ENSMUSP00000018651
Original member Current member EBI ENSMUST00000102643.1 ENSMUSP00000099703.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102643.1Link to Ensembl Protein Viewer:ENSMUSP00000099703.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102643Re-query CCDS DB by Protein ID:ENSMUSP00000099703
Original member Current member NCBI NM_011706.2 NP_035836.2 Accepted alive Link to Nucleotide Sequence:NM_011706.2Link to Protein Sequence:NP_035836.2Re-query CCDS DB by Nucleotide ID:NM_011706Re-query CCDS DB by Protein ID:NP_035836Link to BLAST:NP_035836.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035836.2 756 Q9WTR1 756 100% 0 0

Chromosomal Locations for CCDS 24827.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62578408 62578595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62581172 62581305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62582843 62583133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62584376 62584674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62589651 62589824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62590163 62590318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62590907 62591005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62592226 62592296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62592751 62592916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62594153 62594219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62594923 62595251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62596910 62597037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62598234 62598313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62600109 62600197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2271 nt):
ATGACTTCAGCCTCCAACCCCCCAGCTTTTAGGCTGGAGACGTCCGATGGAGATGAAGAAGGCAGTGCTG
AGGTGAACAAAGGAAAGAATGAGCCACCCCCCATGGAGTCTCCCTTCCAGGGAGAGGACCGGAACTTCTC
CCCTCAGATTAAAGTGAATCTCAACTACCGAAAGGGACTGGGTCCCAGCCAACAGGACCCAAATCGGTTT
GACCGTGACCGACTCTTCAGTGTGGTCTCCCGGGGTGTCCCCGAGGAGCTGACTGGACTGCTAGAGTACC
TGCGCCGGACCAGCAAGTACCTCACTGACTCGGCATACACAGAAGGCTCCACTGGAAAGACGTGCCTGAT
GAAGGCTGTGCTGAACCTTCAGGATGGGGTCAATGCCTGTATCCTGCCGCTGCTGCAGATTGACAGGGAT
TCCGGCAATCCTCAGCCCCTTGTCAATGCCCAGTGCACCGATGAGTTCTACCGAGGCCACAGTGCGCTGC
ACATCGCCATAGAGAAGAGGAGCCTGTGGTGCGTGAAGCTGCTGGTAGAGAATGGAGCGAATGTTCACAT
CCGAGCCTGTGGCCGCTTCTTCCAAAAGCACCAAGGAACTTGTTTCTATTTTGGAGAGCTACCTCTTTCT
CTGGCAGCGTGCACCAAGCAGTGGGATGTGGTGACCTACCTCCTGGAGAACCCACACCAGCCTGCCAGCC
TGGAGGCCACCGACTCCCTGGGCAACACAGTCCTGCATGCTCTGGTAATGATTGCAGACAACTCACCTGA
GAACAGTGCGCTGGTGATCCACATGTATGACAGCCTTCTCCAAATGGGGGCCCGCCTCTGCCCCACTGTA
CAGCTTGAGGATATCTGCAACCATCAAGGCCTCACACCCCTGAAGTTGGCTGCCAAGGAAGGTAAAATTG
AGATCTTCAGGCACATCCTGCAGCGGGAGTTCTCAGGGCTGTACCAGCCCCTTTCCCGAAAGTTCACCGA
GTGGTGCTACGGTCCTGTCCGAGTGTCACTGTACGACCTGTCCTCTGTGGACAGTTGGGAAAAGAACTCG
GTCCTGGAAATCATCGCTTTCCATTGCAAGAGCCCGCACCGGCACCGCATGGTGGTTTTAGAGCCACTGA
ACAAGCTTCTGCAGGAGAAATGGGATCGGCTCATCCCAAGATTCTTCTTCAACTTCGCCTGTTACTTGGT
CTACATGATCATCTTCACCATAGTTGCCTACCACCAGCCTTCCCTGGAGCAGCCAGCCATTCCCTCATCA
AAAGCGACTTTTGGGGACTCCATGCTGCTGTTGGGCCACATTCTGATCCTGCTTGGGGGTATTTACCTCT
TACTGGGCCAGCTGTGGTACTTTTGGCGGCGGCGCCTGTTCATCTGGATCTCGTTCATGGACAGTTACTT
TGAAATCCTCTTCCTTGTCCAGGCGCTGCTCACAGTGCTGTCCCAGGTGCTGCGCTTCGTGGAGACTGAA
TGGTACCTCCCCCTGTTAGTGTCATCCCTAGTGCTGGGCTGGCTGAACCTGCTTTATTATACACGTGGCT
TTCAGCACACAGGCATCTACAGTGTCATGATCCAAAAGGTCATTCTGCGAGACCTGCTCCGCTTCCTGCT
GGTCTACCTAGTCTTCCTTTTCGGCTTTGCTGTAGCCCTAGTAAGCTTGAGCCGGGAGGCCCGAAGTCCC
AAAGCCCCTGAAGATAGCAACACCACTGTGACGGAAAAGCCCACGCTGGGTCAGGAGGAGGAGCCAGTCC
CATATGGGGGCATTCTGGATGCCTCCCTAGAGCTGTTCAAGTTCACCATTGGTATGGGTGAGCTGGCTTT
CCAGGAACAGCTGCGCTTTCGTGGGGTGGTGCTGCTGTTGCTGTTGGCCTACGTCCTCCTCACCTACGTC
CTACTGCTCAACATGCTCATTGCCCTCATGAGTGAGACTGTCAACAGCGTTGCCACTGACAGCTGGAGCA
TCTGGAAGTTGCAGAAAGCCATCTCTGTCTTGGAGATGGAGAATGGTTACTGGTGGTGCAGGAGGAAAAG
GCATCGCGCAGGGAGGCTGCTGAAAGTTGGCACCAAAGGGGATGGTATACCTGATGAGCGCTGGTGCTTC
AGGGTGGAGGAAGTAAACTGGGCTGCATGGGAGAAGACCCTTCCCACCTTATCTGAGGATCCATCAGGGG
CAGGCATCACTGGTTATAAAAAGAACCCAACCTCTAAACCTGGGAAGAACAGTGCCTCAGAGGAAGACCA
TCTGCCTCTTCAGGTCCTCCAGTCCCACTGA

Translation (756 aa):
MTSASNPPAFRLETSDGDEEGSAEVNKGKNEPPPMESPFQGEDRNFSPQIKVNLNYRKGLGPSQQDPNRF
DRDRLFSVVSRGVPEELTGLLEYLRRTSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACILPLLQIDRD
SGNPQPLVNAQCTDEFYRGHSALHIAIEKRSLWCVKLLVENGANVHIRACGRFFQKHQGTCFYFGELPLS
LAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDSLLQMGARLCPTV
QLEDICNHQGLTPLKLAAKEGKIEIFRHILQREFSGLYQPLSRKFTEWCYGPVRVSLYDLSSVDSWEKNS
VLEIIAFHCKSPHRHRMVVLEPLNKLLQEKWDRLIPRFFFNFACYLVYMIIFTIVAYHQPSLEQPAIPSS
KATFGDSMLLLGHILILLGGIYLLLGQLWYFWRRRLFIWISFMDSYFEILFLVQALLTVLSQVLRFVETE
WYLPLLVSSLVLGWLNLLYYTRGFQHTGIYSVMIQKVILRDLLRFLLVYLVFLFGFAVALVSLSREARSP
KAPEDSNTTVTEKPTLGQEEEPVPYGGILDASLELFKFTIGMGELAFQEQLRFRGVVLLLLLAYVLLTYV
LLLNMLIALMSETVNSVATDSWSIWKLQKAISVLEMENGYWWCRRKRHRAGRLLKVGTKGDGIPDERWCF
RVEEVNWAAWEKTLPTLSEDPSGAGITGYKKNPTSKPGKNSASEEDHLPLQVLQSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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