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Report for CCDS3852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3852.1 Public Homo sapiens 5 CCDC127 24 110 108 CCDS HistoryNCBI Gene:133957Re-query CCDS DB by CCDS ID:3852.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296824.4 ENSP00000296824.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296824.4Link to Ensembl Protein Viewer:ENSP00000296824.2Re-query CCDS DB by Nucleotide ID:ENST00000296824Re-query CCDS DB by Protein ID:ENSP00000296824
Original member Current member NCBI NM_145265.3 NP_660308.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145265.3Link to Protein Sequence:NP_660308.1Re-query CCDS DB by Nucleotide ID:NM_145265Re-query CCDS DB by Protein ID:NP_660308Link to BLAST:NP_660308.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660308.1 260 Q96BQ5 260 100% 0 0

Chromosomal Locations for CCDS 3852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 205297 205958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 216729 216849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGAATAACCTAAATGATCCCCCAAATTGGAATATCCGGCCTAATTCCAGGGCGGATGGTGGTGATGGAA
GC
AGGTGGAATTATGCCCTGTTGGTTCCAATGCTGGGATTGGCTGCTTTTCGTTGGATTTGGTCTAGGGA
G
TCCCAGAAAGAAGTAGAAAAAGAGAGAGAAGCCTACCGTCGGAGAACTGCTGCTTTTCAACAGGATCTG
GAA
GCCAAGTACCACGCCATGATCTCAGAAAATCGGCGTGCTGTCGCTCAGTTGTCCTTGGAACTCGAAA
AG
GAACAAAACAGAACTGCTAGTTACCGAGAAGCCCTTATCTCTCAGGGACGCAAGTTGGTAGAAGAAAA
G
AAGCTTCTGGAACAGGAACGGGCCCAGGTGATGCAAGAAAAAAGACAGGTGCAGCCTTTGAGAAGTGCG
TAT
TTGAGCTGCCTGCAAAGGGAAGAAAACTGGCAAAGGAGAGCCAGGCTTTTGCTGAAAGAATTTGAAG
CT
GTTCTCACAGAAAGACAGAATATCTACTGCAGTCTGTTTCTTCCTCGCAGCAAGCGGCTGGAGATAGA
G
AAGAGCTTACTGGTGCGAGCGTCCGTCGACCCCGTCGCCGCTGACCTAGAGATGGCAGCCGGTCTCACC
GAC
ATATTTCAGCATGATACATACTGTGGTGATGTCTGGAACACCAACAAACGCCAGAATGGCAGACTCA
TG
TGGCTCTATCTCAAATACTGGGAACTCGTTGTCGAACTGAAGAAGTTTAAGAGAGTAGAGGAAGCCAT
A
CTAGAAAAGTAA


Translation (260 aa):
MNNLNDPPNWNIRPNSRADGGDGSRWNYALLVPMLGLAAFRWIWSRESQKEVEKEREAYRRRTAAFQQDL
E
AKYHAMISENRRAVAQLSLELEKEQNRTASYREALISQGRKLVEEKKLLEQERAQVMQEKRQVQPLRSA
Y
LSCLQREENWQRRARLLLKEFEAVLTERQNIYCSLFLPRSKRLEIEKSLLVRASVDPVAADLEMAAGLT
D
IFQHDTYCGDVWNTNKRQNGRLMWLYLKYWELVVELKKFKRVEEAILEK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser