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Report for CCDS50907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50907.1 Public Mus musculus 3 Rfxap 23 108 98 CCDS HistoryNCBI Gene:170767Re-query CCDS DB by CCDS ID:50907.1Re-query CCDS DB by GeneID:170767See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 50907.1
This CCDS representation uses a non-canonical ACG translation initiation codon. The use of this start codon is supported by experimental evidence in PMID:11486010. This start codon is conserved in several non-primate vertebrate species, while most primates have a canonical AUG start codon in the equivalent position.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 50907.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044373.5 ENSMUSP00000040917.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044373.5Link to Ensembl Protein Viewer:ENSMUSP00000040917.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000044373Re-query CCDS DB by Protein ID:ENSMUSP00000040917
Original member Current member EBI ENSMUST00000217267.1 ENSMUSP00000149458.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217267.1Link to Ensembl Protein Viewer:ENSMUSP00000149458.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217267Re-query CCDS DB by Protein ID:ENSMUSP00000149458
Original member Current member NCBI NM_133231.2 NP_573494.1 Accepted alive Link to Nucleotide Sequence:NM_133231.2Link to Protein Sequence:NP_573494.1Re-query CCDS DB by Nucleotide ID:NM_133231Re-query CCDS DB by Protein ID:NP_573494Link to BLAST:NP_573494.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573494.1 231 Q8VCG9 231 100% 0 0

Chromosomal Locations for CCDS 50907.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 54804465 54804575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54805360 54805467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54807199 54807675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol T (codon ACG) with M at amino acid position 1

Nucleotide Sequence (696 nt):
ACGGAGGCGCAGGCTGTGCCCGAGGGCTCGGGGCCGAGCACCGCCAGTCCCCGGACGGCCCCTCCGGTGA
CGGTGCTGGTGATGCGGCAGGACGAGGCCGAGGCGGACGGCGCTCTGAGGCCGGGCCTGGCGGGGAGTGA
GGCGGCGGCAGACGCCGAGGACGAGGCGGGGGACGACGACGCCGACCTGCTGGACACATCGGACCCGGCG
GGCGGCGGCGAGAGTGCGGCCAGCCCGGAGGAGCTGGAGGACGAGGACGCGGAGGGTGGCGGCGCAGCGC
GCAGGCGAGGCTCCAAGACCTGCACGTACGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCG
CAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAAGAAGAAGAAGAGCGAC
CAGGCACTGGGCTCTGGCGGCCCGTCCGCGGCCAGCACAGGCAACGTCAAACTGGAGGAAAGCACAGACA
ACATACTCTCCATTGTCAAACAGAGAACAGGATCCTTTGGTGATCGCCCTGCAAGACCTACTCTTCTAGA
GCAAGTGTTAAATCAGAAAAGACTGTCATTACTAAGAAGTCCAGAAGTTGTCCAGTTTTTACAGAAGCAG
CAGCAGCTACTAAATCAGCAAGTTTTGGAGCAAAGACAGCAGCATTTCCCAGGAGCGCCAGTGTGA

Translation (231 aa):
MEAQAVPEGSGPSTASPRTAPPVTVLVMRQDEAEADGALRPGLAGSEAAADAEDEAGDDDADLLDTSDPA
GGGESAASPEELEDEDAEGGGAARRRGSKTCTYEGCRETTSQVAKQRKPWMCKKHRNKMYKDKYKKKKSD
QALGSGGPSAASTGNVKLEESTDNILSIVKQRTGSFGDRPARPTLLEQVLNQKRLSLLRSPEVVQFLQKQ
QQLLNQQVLEQRQQHFPGAPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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