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Report for CCDS16015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16015.1 Public Mus musculus 2 Rpl35 23 108 98 CCDS HistoryNCBI Gene:66489Re-query CCDS DB by CCDS ID:16015.1Re-query CCDS DB by GeneID:66489See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16015.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080861.5 ENSMUSP00000079672.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080861.5Link to Ensembl Protein Viewer:ENSMUSP00000079672.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080861Re-query CCDS DB by Protein ID:ENSMUSP00000079672
Original member Current member NCBI NM_025592.3 NP_079868.1 Accepted alive Link to Nucleotide Sequence:NM_025592.3Link to Protein Sequence:NP_079868.1Re-query CCDS DB by Nucleotide ID:NM_025592Re-query CCDS DB by Protein ID:NP_079868Link to BLAST:NP_079868.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079868.1 123 Q6ZWV7 123 100% 0 0

Chromosomal Locations for CCDS 16015.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 39001616 39001765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39004107 39004188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39004732 39004868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39005084 39005086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGCCAAGATTAAGGCTCGGGACCTGCGCGGCAAGAAGAAGGAGGAGCTGTTGAAACAACTGGACGATC
TGAAGGTGGAATTGTCCCAGCTTCGGGTCGCCAAAGTGACAGGCGGCGCCGCGTCCAAGCTCTCCAAGAT
ACGAGTCGTTCGCAAGTCTATCGCCCGAGTCCTCACTGTTATTAACCAGACTCAAAAAGAAAACCTCAGG
AAATTCTACAAGGGCAAGAAATACAAGCCCCTAGACCTGCGACCCAAGAAGACTAGAGCCATGCGCCGCC
GGCTCACCAAGCACGAGGAGAAGCTGAAGACCAAGAAGCAGCAGCGGAAGGAGCGGCTGTATCCTCTGCG
CAAGTATGCAGTCAAGGCCTGA

Translation (123 aa):
MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLR
KFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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