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Report for CCDS22328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22328.1 Public Mus musculus 8 Msmo1 23 108 98 CCDS HistoryNCBI Gene:66234Re-query CCDS DB by CCDS ID:22328.1Re-query CCDS DB by GeneID:66234See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034015.10 ENSMUSP00000034015.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034015.10Link to Ensembl Protein Viewer:ENSMUSP00000034015.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034015Re-query CCDS DB by Protein ID:ENSMUSP00000034015
Original member Current member NCBI NM_025436.3 NP_079712.1 Accepted alive Link to Nucleotide Sequence:NM_025436.3Link to Protein Sequence:NP_079712.1Re-query CCDS DB by Nucleotide ID:NM_025436Re-query CCDS DB by Protein ID:NP_079712Link to BLAST:NP_079712.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079712.1 293 Q9CRA4 293 100% 0 0

Chromosomal Locations for CCDS 22328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 64718986 64719181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64720342 64720496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64722464 64722590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64723588 64723736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64727624 64727878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGCCACAAACAAAAGTGTTGGCGTGTTCAGCTCTGCATCCCTGGCTGTGGAGTATGTGGACTCACTGT
TGCCGGAGAATCCTCTGCAGGAGCCCTTTAAGAATGCTTGGGTCTACATGTTGGACAACTATACAAAGTT
CCAGATCGCAACCTGGGGCTCCCTGATAGTTCACGAAGCCATCTATTTCTTGTTCTCTTTACCTGGATTC
CTATTCCAGTTTATACCTTACATGAGAAAGTACAAGATTCAAAAGGATAAACCAGAAACCTTCGAAGGCC
AGTGGAAGTGTTTGAAAAAAATTCTATTTAATCATTTTTTTATCCAGTTGCCTCTGATTTGTGGAACATA
CTATTTTACAGAGTTTTTCAATATTCCTTATGATTGGGAAAGAATGCCAAGATGGTACTTAACTTTGGCA
AGGTGTTTGGGCTGTGCAGTCATTGAGGACACCTGGCATTATTTCCTGCACAGACTCCTTCACCACAAGA
GAATTTATAAATACATTCATAAAGTCCATCACGAGTTTCAGGCTCCATTTGGAATCGAAGCAGAATACGC
ACATCCCTTGGAAACCCTGATTCTTGGGACAGGATTTTTCATCGGAATTGTGCTTTTGTGTGATCACGTA
ATTCTCCTGTGGGCATGGGTGACCATACGTTTGCTGGAAACCATCGATGTGCACAGCGGTTATGATATTC
CTCTCAACCCGCTGAACTTGGTTCCTTTTTATACGGGCGCTCGGCACCATGATTTCCACCACATGAACTT
CATTGGGAATTATGCCTCCACCTTCACGTGGTGGGATAAACTCTTTGGGACAGATGCCCAGTATCATGCC
TACATTGAAAAATCGAAGAAGCTTGGGAAAAAGTCTGATTGA

Translation (293 aa):
MATNKSVGVFSSASLAVEYVDSLLPENPLQEPFKNAWVYMLDNYTKFQIATWGSLIVHEAIYFLFSLPGF
LFQFIPYMRKYKIQKDKPETFEGQWKCLKKILFNHFFIQLPLICGTYYFTEFFNIPYDWERMPRWYLTLA
RCLGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPFGIEAEYAHPLETLILGTGFFIGIVLLCDHV
ILLWAWVTIRLLETIDVHSGYDIPLNPLNLVPFYTGARHHDFHHMNFIGNYASTFTWWDKLFGTDAQYHA
YIEKSKKLGKKSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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