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Report for CCDS18457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18457.1 Public Mus musculus 4 Txndc12 23 108 98 CCDS HistoryNCBI Gene:66073Re-query CCDS DB by CCDS ID:18457.1Re-query CCDS DB by GeneID:66073See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18457.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030296.8 ENSMUSP00000030296.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030296.8Link to Ensembl Protein Viewer:ENSMUSP00000030296.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030296Re-query CCDS DB by Protein ID:ENSMUSP00000030296
Original member Current member NCBI NM_025334.3 NP_079610.1 Accepted alive Link to Nucleotide Sequence:NM_025334.3Link to Protein Sequence:NP_079610.1Re-query CCDS DB by Nucleotide ID:NM_025334Re-query CCDS DB by Protein ID:NP_079610Link to BLAST:NP_079610.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079610.1 170 Q9CQU0 170 100% 0 0

Chromosomal Locations for CCDS 18457.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108834766 108834856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108845951 108846011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108853169 108853221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108856148 108856221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108857925 108857994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108859275 108859358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108861367 108861446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGTCGCTTCGTTTCGGGGCCACCTGTTTGCTGAGCTTCAGTTTCCTGCTCCTCATCACTTCTTCAGACG
GACGCACTGGGCTTGGAAAGGGTTTTGGAGATCACATTCACTGGAGGACTCTGGAAGATGGCAAGAAGGA
AGCAGCTGCAAGTGGCTTGCCGCTGATGGTGATCATCCATAAATCTTGGTGTGGAGCCTGCAAAGCTTTA
AAACCCAAATTTGCAGAATCTACAGAAATTTCAGAACTGTCCCATAATTTTGTTATGGTAAATCTGGAGG
ATGAAGAGGAGCCCAGGGATGAAGACTTCAGCCCTGATGGGGGTTATATCCCACGCATCCTTTTCTTGGA
TCCCAGTGGCAAGGTGCGTCCTGAAATCATCAATGAGAGTGGAAACCCCAGCTACAAGTATTTCTACGTC
AGTGCTGAGCAAGTTGTTCAAGGGATGAAGGAAGCTCAGGAGAGGCTGACGGGCGACGCCTTCAGAGAGA
AACACTTTCAGGATGAGTTGTGA

Translation (170 aa):
MSLRFGATCLLSFSFLLLITSSDGRTGLGKGFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKAL
KPKFAESTEISELSHNFVMVNLEDEEEPRDEDFSPDGGYIPRILFLDPSGKVRPEIINESGNPSYKYFYV
SAEQVVQGMKEAQERLTGDAFREKHFQDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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