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Report for CCDS12983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12983.1 Public Homo sapiens 19 SLC27A5 24 110 108 CCDS HistoryNCBI Gene:10998Re-query CCDS DB by CCDS ID:12983.1Re-query CCDS DB by GeneID:10998See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12983.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263093.7 ENSP00000263093.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263093.7Link to Ensembl Protein Viewer:ENSP00000263093.2Re-query CCDS DB by Nucleotide ID:ENST00000263093Re-query CCDS DB by Protein ID:ENSP00000263093
Original member Current member NCBI NM_012254.3 NP_036386.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012254.3Link to Protein Sequence:NP_036386.1Re-query CCDS DB by Nucleotide ID:NM_012254Re-query CCDS DB by Protein ID:NP_036386Link to BLAST:NP_036386.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036386.1 690 Q9Y2P5-1 690 100% 0 0

Chromosomal Locations for CCDS 12983.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58498515 58498691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58498785 58498915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58499123 58499220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58499492 58499690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58500339 58500429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58500512 58500706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58501286 58501410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58509847 58510005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58510721 58510930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58511268 58511955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGGGTGTCAGGCAACAGTTGGCCTTGCTGCTGCTGCTGCTGCTCCTGCTCTGGGGCCTGGGGCAGCCAG
TGTGGCCAGTCGCTGTGGCCTTGACCCTGCGCTGGCTCCTGGGGGATCCCACATGTTGCGTGCTACTTGG
GCTGGCCATGTTAGCACGGCCCTGGCTCGGCCCCTGGGTGCCCCATGGGCTGAGCCTGGCAGCTGCGGCC
CTGGCACTAACCCTCCTGCCAGCACGGCTGCCCCCAGGACTACGCTGGCTGCCGGCTGATGTGATCTTCT
TGGCCAAGATCCTCCACCTGGGCCTGAAGATCAGGGGATGCTTGAGCCGGCAGCCGCCTGACACCTTTGT
AGATGCCTTCGAGCGGCGAGCACGAGCGCAGCCTGGCAGGGCACTCTTGGTGTGGACGGGGCCTGGGGCC
GGCTCAGTCACCTTTGGTGAGCTGGATGCCCGGGCCTGCCAGGCGGCATGGGCCCTGAAGGCTGAGCTGG
GTGACCCTGCGAGCCTGTGTGCCGGGGAGCCTACTGCCCTCCTTGTGCTGGCTTCCCAGGCCGTTCCAGC
CCTGTGTATGTGGCTGGGGCTGGCCAAGCTGGGCTGCCCAACAGCCTGGATCAACCCGCATGGCCGGGGG
ATGCCCCTGGCGCACTCTGTGCTGAGCTCTGGGGCCCGGGTGCTGGTGGTGGACCCAGACCTCCGGGAGA
GCCTGGAGGAGATCCTTCCCAAGCTGCAGGCTGAGAACATCCGCTGCTTCTACCTCAGCCATACCTCCCC
TACACCAGGGGTGGGGGCTCTGGGGGCTGCCCTGGATGCAGCGCCCTCCCACCCAGTGCCTGCTGACCTG
CGTGCTGGGATCACATGGAGAAGCCCTGCCCTCTTCATCTATACCTCGGGGACCACTGGCCTCCCGAAGC
CAGCCATCCTCACGCATGAGCGGGTACTGCAGATGAGCAAGATGCTGTCCTTATCTGGGGCCACAGCTGA
TGATGTGGTTTACACGGTCCTGCCTCTGTACCACGTGATGGGACTTGTCGTTGGGATCCTCGGCTGCTTA
GATCTCGGAGCCACCTGTGTTCTGGCCCCCAAGTTCTCTACTTCCTGCTTCTGGGATGACTGTCGGCAGC
ATGGCGTGACAGTGATCCTGTATGTGGGCGAGCTCCTGCGGTACTTGTGTAACATTCCCCAGCAACCAGA
GGACCGGACACATACAGTCCGCCTGGCAATGGGCAATGGACTACGGGCTGATGTGTGGGAGACCTTCCAG
CAGCGCTTCGGTCCTATTCGGATCTGGGAAGTCTACGGCTCCACAGAAGGCAACATGGGCTTAGTCAACT
ATGTGGGGCGCTGCGGGGCCCTGGGCAAGATGAGCTGCCTCCTCCGAATGCTGTCCCCCTTTGAGCTGGT
GCAGTTCGACATGGAGGCGGCGGAGCCTGTGAGGGACAATCAGGGCTTCTGCATCCCTGTAGGGCTAGGG
GAGCCGGGGCTGCTGCTGACCAAGGTGGTAAGCCAGCAACCCTTCGTGGGCTACCGCGGCCCCCGAGAGC
TGTCGGAACGGAAGCTGGTGCGCAACGTGCGGCAATCGGGCGACGTTTACTACAACACCGGGGACGTACT
GGCCATGGACCGCGAAGGCTTCCTCTACTTCCGCGACCGCCTCGGGGACACCTTCCGATGGAAGGGCGAG
AACGTGTCCACGCACGAGGTGGAGGGCGTGTTGTCGCAGGTGGACTTCTTGCAACAGGTTAACGTGTATG
GCGTGTGCGTGCCAGGTTGTGAGGGTAAGGTGGGCATGGCTGCTGTGCAGCTAGCCCCCGGCCAGACTTT
CGACGGGGAGAAGTTGTACCAGCACGTTCGCGCTTGGCTCCCTGCCTACGCTACCCCCCATTTCATCCGC
ATCCAGGACGCCATGGAGGTCACCAGCACGTTCAAACTGATGAAGACCCGGTTGGTGCGTGAGGGCTTCA
ATGTGGGGATCGTGGTTGACCCTCTGTTTGTACTGGACAACCGGGCCCAGTCCTTCCGGCCCCTGACGGC
AGAAATGTACCAGGCTGTGTGTGAGGGAACCTGGAGGCTCTGA

Translation (690 aa):
MGVRQQLALLLLLLLLLWGLGQPVWPVAVALTLRWLLGDPTCCVLLGLAMLARPWLGPWVPHGLSLAAAA
LALTLLPARLPPGLRWLPADVIFLAKILHLGLKIRGCLSRQPPDTFVDAFERRARAQPGRALLVWTGPGA
GSVTFGELDARACQAAWALKAELGDPASLCAGEPTALLVLASQAVPALCMWLGLAKLGCPTAWINPHGRG
MPLAHSVLSSGARVLVVDPDLRESLEEILPKLQAENIRCFYLSHTSPTPGVGALGAALDAAPSHPVPADL
RAGITWRSPALFIYTSGTTGLPKPAILTHERVLQMSKMLSLSGATADDVVYTVLPLYHVMGLVVGILGCL
DLGATCVLAPKFSTSCFWDDCRQHGVTVILYVGELLRYLCNIPQQPEDRTHTVRLAMGNGLRADVWETFQ
QRFGPIRIWEVYGSTEGNMGLVNYVGRCGALGKMSCLLRMLSPFELVQFDMEAAEPVRDNQGFCIPVGLG
EPGLLLTKVVSQQPFVGYRGPRELSERKLVRNVRQSGDVYYNTGDVLAMDREGFLYFRDRLGDTFRWKGE
NVSTHEVEGVLSQVDFLQQVNVYGVCVPGCEGKVGMAAVQLAPGQTFDGEKLYQHVRAWLPAYATPHFIR
IQDAMEVTSTFKLMKTRLVREGFNVGIVVDPLFVLDNRAQSFRPLTAEMYQAVCEGTWRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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