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Report for CCDS3707.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3707.1 Public Homo sapiens 4 TRAM1L1 24 110 108 CCDS HistoryNCBI Gene:133022Re-query CCDS DB by CCDS ID:3707.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3707.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310754.5 ENSP00000309402.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310754.5Link to Ensembl Protein Viewer:ENSP00000309402.4Re-query CCDS DB by Nucleotide ID:ENST00000310754Re-query CCDS DB by Protein ID:ENSP00000309402
Original member Current member NCBI NM_152402.3 NP_689615.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152402.3Link to Protein Sequence:NP_689615.2Re-query CCDS DB by Nucleotide ID:NM_152402Re-query CCDS DB by Protein ID:NP_689615Link to BLAST:NP_689615.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689615.2 369 Q8N609 369 100% 0 0

Chromosomal Locations for CCDS 3707.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117084284 117085393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGGGGCTCCGTAAGAAGAGCACCAAGAACCCCCCCGTTCTCAGCCAGGAATTCATCCTGCAGAATCATG
CGGACATCGTCTCCTGCGTGGGGATGTTCTTCCTGCTGGGGCTTGTGTTCGAGGGAACAGCAGAAGCATC
CATCGTGTTTCTCACTCTTCAGCACAGTGTTGCTGTCCCTGCAGCAGAGGAACAAGCCACGGGCTCAAAG
TCCCTCTATTATTATGGTGTCAAAGATTTGGCCACGGTTTTCTTCTACATGCTGGTGGCAATCATTATTC
ATGCCACAATTCAGGAATATGTGTTGGATAAAATTAACAAGAGAATGCAGTTCACCAAAGCGAAACAAAA
CAAGTTTAACGAGTCTGGTCAGTTTAGTGTGTTCTACTTTTTTTCTTGTATTTGGGGCACATTCATTTTA
ATCTCTGAAAACTGCCTGTCAGACCCAACTCTTATATGGAAGGCTCGTCCCCATAGCATGATGACATTTC
AAATGAAGTTTTTCTACATATCCCAGTTGGCTTACTGGTTTCATGCTTTTCCTGAACTCTACTTCCAGAA
AACCAAAAAACAAGACATCCCTCGTCAACTTGTCTACATTGGTCTTCACCTCTTCCACATTACTGGAGCT
TATCTCTTGTACTTGAATCATTTGGGACTTCTTCTTTTGGTACTGCATTATTTTGTTGAATTACTTTCCC
ACATGTGCGGCCTGTTTTACTTTAGTGATGAAAAGTACCAGAAAGGCATATCTCTGTGGGCCATTGTGTT
TATCTTGGGTAGACTTGTGACTTTAATTGTTTCCGTACTCACTGTTGGGTTTCACCTGGCTGGATCGCAG
AATCGGAATCCTGATGCCCTTACTGGAAATGTAAATGTGTTGGCAGCTAAAATTGCTGTTCTGTCGTCCA
GTTGCACGATCCAAGCCTACGTAACATGGAACTTAATTACTCTCTGGCTTCAGAGGTGGGTAGAAGATTC
TAATATTCAGGCCTCATGTATGAAAAAGAAACGGTCGAGATCTTCTAAAAAAAGAACAGAAAACGGAGTG
GGAGTGGAAACTTCAAATAGAGTAGACTGTCCGCCAAAGAGGAAAGAGAAATCTTCATAA

Translation (369 aa):
MGLRKKSTKNPPVLSQEFILQNHADIVSCVGMFFLLGLVFEGTAEASIVFLTLQHSVAVPAAEEQATGSK
SLYYYGVKDLATVFFYMLVAIIIHATIQEYVLDKINKRMQFTKAKQNKFNESGQFSVFYFFSCIWGTFIL
ISENCLSDPTLIWKARPHSMMTFQMKFFYISQLAYWFHAFPELYFQKTKKQDIPRQLVYIGLHLFHITGA
YLLYLNHLGLLLLVLHYFVELLSHMCGLFYFSDEKYQKGISLWAIVFILGRLVTLIVSVLTVGFHLAGSQ
NRNPDALTGNVNVLAAKIAVLSSSCTIQAYVTWNLITLWLQRWVEDSNIQASCMKKKRSRSSKKRTENGV
GVETSNRVDCPPKRKEKSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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