NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3741.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3741.1 Public Homo sapiens 4 C4orf33 24 110 108 CCDS HistoryNCBI Gene:132321Re-query CCDS DB by CCDS ID:3741.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3741.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281146.9 ENSP00000281146.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000281146.9Link to Ensembl Protein Viewer:ENSP00000281146.4Re-query CCDS DB by Nucleotide ID:ENST00000281146Re-query CCDS DB by Protein ID:ENSP00000281146
Original member Current member EBI ENST00000425929.6 ENSP00000401090.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000425929.6Link to Ensembl Protein Viewer:ENSP00000401090.1Re-query CCDS DB by Nucleotide ID:ENST00000425929Re-query CCDS DB by Protein ID:ENSP00000401090
Original member Current member NCBI NM_001099783.2 NP_001093253.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099783.2Link to Protein Sequence:NP_001093253.1Re-query CCDS DB by Nucleotide ID:NM_001099783Re-query CCDS DB by Protein ID:NP_001093253Link to BLAST:NP_001093253.1
Original member Current member NCBI NM_173487.3 NP_775758.2 Accepted alive Link to Nucleotide Sequence:NM_173487.3Link to Protein Sequence:NP_775758.2Re-query CCDS DB by Nucleotide ID:NM_173487Re-query CCDS DB by Protein ID:NP_775758Link to BLAST:NP_775758.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093253.1 199 Q8N1A6 199 100% 0 0
NP_775758.2 199 Q8N1A6 199 100% 0 0

Chromosomal Locations for CCDS 3741.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129102611 129102791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129106587 129106647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129109307 129109358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129109473 129109672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129111686 129111791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGATTTTAAAATTGAACACACTTGGGATGGTTTTCCAGTGAAGCATGAGCCCGTATTTATCAGGCTGA
ATCCAGGTGACAGAGGAGTGATGATGGACATTAGTGCTCCATTTTTCAGGGATCCTCCAGCCCCACTTGG
AGAACCAGGAAAACCTTTCAATGAACTGTGGGATTATGAAGTTGTGGAAGCATTTTTCTTGAATGATATA
ACTGAGCAATATTTAGAAGTTGAACTTTGTCCCCACGGACAGCATTTAGTGCTTTTACTTTCTGGAAGAA
GAAATGTGTGGAAACAAGAACTTCCTTTATCGTTCAGAATGTCCAGAGGAGAGACAAAATGGGAAGGCAA
AGCTTATCTCCCTTGGAGTTATTTTCCACCAAATGTGACAAAATTCAATTCATTTGCAATTCATGGATCA
AAAGATAAACGAAGTTATGAAGCTCTTTACCCTGTACCTCAGCATGAACTGCAGCAAGGACAAAAACCTG
ATTTCCATTGCCTAGAATACTTCAAGTCTTTCAATTTTAACACACTGCTTGGAGAAGAGTGGAAACAACC
GGAATCAGACCTGTGGCTAATAGAGAAATGTGATATATAG

Translation (199 aa):
MDFKIEHTWDGFPVKHEPVFIRLNPGDRGVMMDISAPFFRDPPAPLGEPGKPFNELWDYEVVEAFFLNDI
TEQYLEVELCPHGQHLVLLLSGRRNVWKQELPLSFRMSRGETKWEGKAYLPWSYFPPNVTKFNSFAIHGS
KDKRSYEALYPVPQHELQQGQKPDFHCLEYFKSFNFNTLLGEEWKQPESDLWLIEKCDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH