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Report for CCDS23116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23116.1 Public Mus musculus 9 Ddx6 23 108 98 CCDS HistoryNCBI Gene:13209Re-query CCDS DB by CCDS ID:23116.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23116.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170489.1 ENSMUSP00000128421.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170489.1Link to Ensembl Protein Viewer:ENSMUSP00000128421.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170489Re-query CCDS DB by Protein ID:ENSMUSP00000128421
Original member Current member EBI ENSMUST00000217034.1 ENSMUSP00000149620.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217034.1Link to Ensembl Protein Viewer:ENSMUSP00000149620.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217034Re-query CCDS DB by Protein ID:ENSMUSP00000149620
Original member NCBI NM_001110826.1 NP_001104296.1 Updated not alive Link to Nucleotide Sequence:NM_001110826.1Link to Protein Sequence:NP_001104296.1Re-query CCDS DB by Nucleotide ID:NM_001110826Re-query CCDS DB by Protein ID:NP_001104296
Current member NCBI NM_001110826.2 NP_001104296.1 Accepted alive Link to Nucleotide Sequence:NM_001110826.2Link to Protein Sequence:NP_001104296.1Re-query CCDS DB by Nucleotide ID:NM_001110826Re-query CCDS DB by Protein ID:NP_001104296Link to BLAST:NP_001104296.1
Original member NCBI NM_001357702.1 NP_001344631.1 Updated not alive Link to Nucleotide Sequence:NM_001357702.1Link to Protein Sequence:NP_001344631.1Re-query CCDS DB by Nucleotide ID:NM_001357702Re-query CCDS DB by Protein ID:NP_001344631
Current member NCBI NM_001357702.2 NP_001344631.1 Accepted alive Link to Nucleotide Sequence:NM_001357702.2Link to Protein Sequence:NP_001344631.1Re-query CCDS DB by Nucleotide ID:NM_001357702Re-query CCDS DB by Protein ID:NP_001344631Link to BLAST:NP_001344631.1
Original member NCBI NM_001357703.1 NP_001344632.1 Updated not alive Link to Nucleotide Sequence:NM_001357703.1Link to Protein Sequence:NP_001344632.1Re-query CCDS DB by Nucleotide ID:NM_001357703Re-query CCDS DB by Protein ID:NP_001344632
Current member NCBI NM_001357703.2 NP_001344632.1 Accepted alive Link to Nucleotide Sequence:NM_001357703.2Link to Protein Sequence:NP_001344632.1Re-query CCDS DB by Nucleotide ID:NM_001357703Re-query CCDS DB by Protein ID:NP_001344632Link to BLAST:NP_001344632.1
Original member NCBI NM_007841.4 NP_031867.1 Updated not alive Link to Nucleotide Sequence:NM_007841.4Link to Protein Sequence:NP_031867.1Re-query CCDS DB by Nucleotide ID:NM_007841Re-query CCDS DB by Protein ID:NP_031867
Current member NCBI NM_007841.5 NP_031867.1 Accepted alive Link to Nucleotide Sequence:NM_007841.5Link to Protein Sequence:NP_031867.1Re-query CCDS DB by Nucleotide ID:NM_007841Re-query CCDS DB by Protein ID:NP_031867Link to BLAST:NP_031867.1
Original member NCBI NM_181324.3 NP_851841.2 Updated not alive Link to Nucleotide Sequence:NM_181324.3Link to Protein Sequence:NP_851841.2Re-query CCDS DB by Nucleotide ID:NM_181324Re-query CCDS DB by Protein ID:NP_851841
Current member NCBI NM_181324.4 NP_851841.2 Accepted alive Link to Nucleotide Sequence:NM_181324.4Link to Protein Sequence:NP_851841.2Re-query CCDS DB by Nucleotide ID:NM_181324Re-query CCDS DB by Protein ID:NP_851841Link to BLAST:NP_851841.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104296.1 483 P54823 483 100% 0 0
NP_001344631.1 483 P54823 483 100% 0 0
NP_001344632.1 483 P54823 483 100% 0 0
NP_031867.1 483 P54823 483 100% 0 0
NP_851841.2 483 P54823 483 100% 0 0

Chromosomal Locations for CCDS 23116.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44607393 44607592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44612828 44612891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44614212 44614316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44623619 44623748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44624475 44624621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44626388 44626482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44627638 44627760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44628641 44628769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44630024 44630140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44631383 44631446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44634093 44634194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44635683 44635858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGAGCACGGCCAGAACAGAGAACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCC
CTGTGAAGGCCAGTGCTGGCCCTGGAGGAGGGGGCACACAGCCACAGCCACAGCTGAACCAGTTGAAGAA
CACCAGCACAATCAATAATGGCACTCCACAGCAAGCCCAGAGCATGGCCGCCACTATTAAACCTGGTGAT
GACTGGAAAAAGACATTAAAACTCCCTCCAAAGGATCTAAGAATCAAAACTTCGGATGTGACCTCCACAA
AAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATGGGCTGGGA
AAAACCATCTCCTATCCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTAGAGCA
AAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAAAGGCTGGACCTGAAGAAGGACA
ATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAGATTTGCATCCAGGT
CAGCAAACACATGGGAGGGGCCAAAGTGATGGCAACCACCGGAGGAACCAATTTACGAGATGACATAATG
AGGCTTGATGATACAGTGCATGTGGTGATCGCTACCCCTGGCAGGATCCTGGATCTCATCAAGAAAGGCG
TGGCAAAGGTTGACCATGTCCAGATGATAGTGCTAGATGAGGCAGATAAATTGTTGTCACAGGATTTTGT
GCAGATAATGGAGGATATTATTCTCACACTACCTAAAAATAGGCAGATTTTACTATACTCCGCTACTTTC
CCTCTTAGTGTACAAAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAAC
TAACTCTGAAAGGAGTAACTCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATAC
ACTTTTCTCCAGGCTTCAGATAAACCAGTCCATCATTTTCTGCAACTCCTCCCAGAGAGTCGAGCTACTC
GCCAAGAAGATTTCTCAGCTGGGCTACTCTTGCTTTTATATCCATGCTAAAATGAGGCAGGAACATCGAA
ATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTACCCGAGG
TATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGAGACCTATCTTCAT
CGTATTGGAAGATCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTGATCACTTATGATGATCGCT
TCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAACCCATCCCAAGCAACATCGACAAGAG
CCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGACGAGAAACCGTAA

Translation (483 aa):
MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGTQPQPQLNQLKNTSTINNGTPQQAQSMAATIKPGD
DWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARA
KNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM
RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATF
PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELL
AKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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