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Report for CCDS19514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19514.1 Public Mus musculus 5 Tmem175 23 108 98 CCDS HistoryNCBI Gene:72392Re-query CCDS DB by CCDS ID:19514.1Re-query CCDS DB by GeneID:72392See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19514.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063272.12 ENSMUSP00000068607.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063272.12Link to Ensembl Protein Viewer:ENSMUSP00000068607.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000063272Re-query CCDS DB by Protein ID:ENSMUSP00000068607
Original member Current member EBI ENSMUST00000078323.12 ENSMUSP00000077437.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078323.12Link to Ensembl Protein Viewer:ENSMUSP00000077437.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078323Re-query CCDS DB by Protein ID:ENSMUSP00000077437
Original member Current member EBI ENSMUST00000120327.2 ENSMUSP00000112780.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120327.2Link to Ensembl Protein Viewer:ENSMUSP00000112780.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120327Re-query CCDS DB by Protein ID:ENSMUSP00000112780
Original member Current member NCBI NM_001163532.1 NP_001157004.1 Accepted alive Link to Nucleotide Sequence:NM_001163532.1Link to Protein Sequence:NP_001157004.1Re-query CCDS DB by Nucleotide ID:NM_001163532Re-query CCDS DB by Protein ID:NP_001157004Link to BLAST:NP_001157004.1
Original member Current member NCBI NM_001359423.1 NP_001346352.1 Accepted alive Link to Nucleotide Sequence:NM_001359423.1Link to Protein Sequence:NP_001346352.1Re-query CCDS DB by Nucleotide ID:NM_001359423Re-query CCDS DB by Protein ID:NP_001346352Link to BLAST:NP_001346352.1
Original member Current member NCBI NM_028223.3 NP_082499.3 Accepted alive Link to Nucleotide Sequence:NM_028223.3Link to Protein Sequence:NP_082499.3Re-query CCDS DB by Nucleotide ID:NM_028223Re-query CCDS DB by Protein ID:NP_082499Link to BLAST:NP_082499.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157004.1 499 Q9CXY1 499 100% 0 0
NP_001346352.1 499 Q9CXY1 499 100% 0 0
NP_082499.3 499 Q9CXY1 499 100% 0 0

Chromosomal Locations for CCDS 19514.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108638347 108638490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108638667 108638705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108639472 108639569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108641822 108641873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108642117 108642152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108642696 108642779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108643039 108643203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108644168 108644246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108644557 108644692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108645839 108646505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGTCCAGGCTCCAGACTGAGGAGCAGGCAGTGGATTCCGAGGGAGACTCATCCCTACACAGGAGAAATG
AGGAGGGGACACAGAGCTCCCACCGCATGCTGGGCTTCAGTGATGCACTGCTGTCCATCATCGCCACTGT
CATGATCCTGCCTGTGACCCACACAGAGATCTCACCAGAACAGCAGTTTGACAAAAGTATACAGAAACTC
CTAGCAACTAGGATCGCTGTCTACCTCATGACATTTCTAATCGTAACTGTGGCCTGGACAGCACATACCA
GATTGTTCCAGGTTGTTGGAAAAATAGATGATACACTTGCCTTGCTCAACCTGGCCTGTATGATGACTAT
CACCCTCCTGCCCTACACATTTTCACTAATGGTAACATTCCCTGATGTGCCCCTGGGCATCTTCCTGTTC
TGCGTGTGTGTGATCGCCATTGGATCTGTGCAGGCAATGATTGTGGGCTATGCCTTCCACTTCCCACATC
TGCTGAATCCACAAATCCAGTGCTCTACACATAGGGATCTATCCCGGCGGCATATCCTGCACCTGGTCCT
CCGTGGCCCAGCACTGTGTTTTGTTGCGGCTGTCTTTTCCCTCTTCTTCTTCCCCTTGTCATACCTGCTG
ATGGTGACTGTCATCTTCCTCCCTCACATCAGCAAGGCTACCACCTGGTGCAAAGACAAGTTGATGGGCC
AAAGGGAGTCTCCAGCTCACGACATGGAGCCCTTCAGTATTGACCTGCATGCGCCCCTCAGCAAAGAGCG
GGTGGAAGCTTTCAGCGACGGTGTCTATGCCATCGTGGCCACACTCCTCATCCTGGACATCTGTGAGGAC
AATGTTCCGGATCCCAAGGATGTGCAAGAGAAATTCAGTGGCAGCCTTGTGGCTGCCCTGGGTGCATATG
GGCCACAATTCTTGGCATACTTCGGCTCCTTCGCCACAGTGGGTCTCCTCTGGTTTGCTCACCATTCACT
CTTCCTGCATGTCCGGAAGGCTACACAGACCATGGGGTTACTCAACATACTATCGCTGGCCTTTGTGGGT
GGCCTTCCTCTGGCCTACCAGCAGACCTCAGCTTTTGCCCGGCAACCCCATGATGAACTTGAGCGTGTGC
GTGTCAGCTGTGCCATCATCTTCTTTGCCAGCATCTTCCAGTTTGCCATCTGGACTACAGCCCTGCTGCA
TCAGACAGAAACACTGCAGCCAGCTGTGCAATTTGGTGGGCAGGAGCATGCTTTCATGTTTGCCAAGCTT
GCACTGTATCCCTGTGCCAGCCTGCTGGCCTTTGCTGCCACCTGCCTACTGAGTCGTTTCAGCACAGCCA
TCTTCCACCTCATGCAGATTTCAGTGCCCTTTGCATTCCTGTTGCTCCGTCTCCTTGTACGCCTTGCCCT
GGCAGGCCTTCAAGTCCTACGGGGCCTCTGGCCACACCATCCCCAACAAGACCAGAGTGAACCTGAGGCA
CAGTCCCAGCTCTTGCCTGACCCCTGCTAA

Translation (499 aa):
MSRLQTEEQAVDSEGDSSLHRRNEEGTQSSHRMLGFSDALLSIIATVMILPVTHTEISPEQQFDKSIQKL
LATRIAVYLMTFLIVTVAWTAHTRLFQVVGKIDDTLALLNLACMMTITLLPYTFSLMVTFPDVPLGIFLF
CVCVIAIGSVQAMIVGYAFHFPHLLNPQIQCSTHRDLSRRHILHLVLRGPALCFVAAVFSLFFFPLSYLL
MVTVIFLPHISKATTWCKDKLMGQRESPAHDMEPFSIDLHAPLSKERVEAFSDGVYAIVATLLILDICED
NVPDPKDVQEKFSGSLVAALGAYGPQFLAYFGSFATVGLLWFAHHSLFLHVRKATQTMGLLNILSLAFVG
GLPLAYQQTSAFARQPHDELERVRVSCAIIFFASIFQFAIWTTALLHQTETLQPAVQFGGQEHAFMFAKL
ALYPCASLLAFAATCLLSRFSTAIFHLMQISVPFAFLLLRLLVRLALAGLQVLRGLWPHHPQQDQSEPEA
QSQLLPDPC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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