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Report for CCDS2481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2481.1 Public Homo sapiens 2 SPATA3 24 110 108 CCDS HistoryNCBI Gene:130560Re-query CCDS DB by CCDS ID:2481.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 2481.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455816.1 ENSP00000388741.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455816.1Link to Ensembl Protein Viewer:ENSP00000388741.1Re-query CCDS DB by Nucleotide ID:ENST00000455816Re-query CCDS DB by Protein ID:ENSP00000388741
Original member Current member EBI ENST00000452881.5 ENSP00000388895.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452881.5Link to Ensembl Protein Viewer:ENSP00000388895.1Re-query CCDS DB by Nucleotide ID:ENST00000452881Re-query CCDS DB by Protein ID:ENSP00000388895
Original member Current member EBI ENST00000424440.5 ENSP00000399514.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424440.5Link to Ensembl Protein Viewer:ENSP00000399514.1Re-query CCDS DB by Nucleotide ID:ENST00000424440Re-query CCDS DB by Protein ID:ENSP00000399514
Original member Current member EBI ENST00000433428.7 ENSP00000403804.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000433428.7Link to Ensembl Protein Viewer:ENSP00000403804.2Re-query CCDS DB by Nucleotide ID:ENST00000433428Re-query CCDS DB by Protein ID:ENSP00000403804
Original member Current member NCBI NM_139073.5 NP_620712.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139073.5Link to Protein Sequence:NP_620712.2Re-query CCDS DB by Nucleotide ID:NM_139073Re-query CCDS DB by Protein ID:NP_620712Link to BLAST:NP_620712.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620712.2 192 Q8NHX4 192 100% 0 0

Chromosomal Locations for CCDS 2481.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 230996234 230996534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231000366 231000537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231002684 231002789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGAAGAAGGTCAAGAAGAAAAGGTCAGAGGCCAGACGCCACCGAGACTCCACCTCCCAGCATGCTAGCT
CCAATTCCACCTCTCAGCAGCCTAGCCCTGAATCCACACCACAGCAGCCTAGTCCTGAATCCACACCACA
GCAGCCTAGCCCTGAATCCACACCACAGCATTCCAGCCTTGAAACCACCTCCCGGCAGCCAGCATTCCAA
GCCCTTCCAGCACCCGAAATCCGCCGCTCCTCTTGCTGCCTTTTATCTCCAGATGCTAACGTGAAGGCAG
CCCCTCAATCCAGGAAAGCAGGGCCTCTGATTCGCGCCGGCCCGCATTCCTGCTCCTGTGCCACTTGCCC
CTGCAGCTCCGCTTGCTGGCGTCGTCTGGGGCTATGCCATAGCCGCATCTTCGATGTCCTTCTGCCTCGG
GACTGGCAGATGGCGCCAGGGAGAGGACTCCCCAACCTGCTCACCTTCTACAGAAAATCTTCAAGAAAAC
CCTCCAGTCATCGTAACGCGTGTCCTCCAAGCCCTCGGAACTGTGGCTGTGGCTCTGGGGGCTCTAGGAG
CTGCCTACTACATCACTGA

Translation (192 aa):
MKKVKKKRSEARRHRDSTSQHASSNSTSQQPSPESTPQQPSPESTPQQPSPESTPQHSSLETTSRQPAFQ
ALPAPEIRRSSCCLLSPDANVKAAPQSRKAGPLIRAGPHSCSCATCPCSSACWRRLGLCHSRIFDVLLPR
DWQMAPGRGLPNLLTFYRKSSRKPSSHRNACPPSPRNCGCGSGGSRSCLLHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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