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Report for CCDS16879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16879.1 Public Mus musculus 2 Csnk2a1 23 108 98 CCDS HistoryNCBI Gene:12995Re-query CCDS DB by CCDS ID:16879.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16879.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099224.9 ENSMUSP00000096829.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099224.9Link to Ensembl Protein Viewer:ENSMUSP00000096829.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099224Re-query CCDS DB by Protein ID:ENSMUSP00000096829
Original member NCBI NM_007788.3 NP_031814.2 Updated not alive Link to Nucleotide Sequence:NM_007788.3Link to Protein Sequence:NP_031814.2Re-query CCDS DB by Nucleotide ID:NM_007788Re-query CCDS DB by Protein ID:NP_031814
Current member NCBI NM_007788.4 NP_031814.2 Accepted alive Link to Nucleotide Sequence:NM_007788.4Link to Protein Sequence:NP_031814.2Re-query CCDS DB by Nucleotide ID:NM_007788Re-query CCDS DB by Protein ID:NP_031814Link to BLAST:NP_031814.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031814.2 391 Q60737 391 100% 0 0

Chromosomal Locations for CCDS 16879.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152250511 152250611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152254210 152254321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152257378 152257479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152257941 152257991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152258676 152258735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152260759 152260842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152263183 152263293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152272628 152272729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152274093 152274193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152275398 152275546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152276947 152277033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152278969 152279084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGTCGGGACCCGTGCCAAGCAGGGCCAGAGTTTACACAGATGTTAACACACACAGACCCCGAGAGTACT
GGGATTATGAATCACATGTGGTGGAATGGGGGAATCAAGATGACTATCAGCTTGTTCGAAAATTAGGTAG
GGGCAAATACAGTGAAGTGTTTGAAGCCATCAACATCACAAATAATGAAAAAGTTGTTGTTAAAATTCTC
AAGCCAGTAAAAAAGAAGAAAATTAAGCGTGAAATAAAGATTTTGGAGAATTTGAGAGGTGGGCCCAACA
TCATCACACTTGCAGACATTGTAAAAGACCCTGTGTCACGAACCCCTGCCTTGGTTTTTGAACATGTAAA
CAACACAGACTTCAAGCAATTGTACCAGACGTTAACAGACTATGACATTCGATTTTACATGTATGAAATT
CTGAAAGCCCTGGATTATTGTCACAGCATGGGGATTATGCACAGAGATGTGAAACCCCATAATGTCATGA
TTGATCATGAGCACAGAAAGCTTCGGCTAATAGACTGGGGTTTAGCTGAGTTTTACCATCCAGGCCAAGA
GTATAATGTCCGAGTTGCTTCTCGATATTTCAAAGGTCCAGAGCTACTTGTAGATTATCAGATGTACGAT
TATAGTTTGGATATGTGGAGCTTGGGTTGTATGCTGGCCAGTATGATCTTCCGGAAGGAGCCATTTTTCC
ATGGACATGACAATTATGATCAGTTGGTGAGGATAGCCAAGGTTCTGGGAACAGAAGATTTATATGACTA
TATTGACAAGTACAACATTGAATTAGATCCACGTTTCAACGATATCTTGGGCAGACACTCCCGTAAGCGA
TGGGAACGCTTTGTCCACAGTGAAAACCAGCATCTTGTCAGCCCTGAGGCCTTGGATTTTCTGGACAAGC
TGCTTCGATATGACCACCAGTCACGGCTCACTGCAAGAGAGGCCATGGAGCACCCTTACTTCTACACTGT
TGTGAAGGACCAGGCTCGAATGAGTTCCACTAGCATGGCAGGGGGCAGCACACCTGTCAGCAGCGCCAAT
ATGATGTCAGGGATTTCTTCAGTGCCAACTCCTTCACCCCTTGGACCTCTGGCAGGCTCACCAGTGATTG
CCGCTGCCAACTCACTTGGGATACCTGTTCCAGCTGCTGCTGGCGCTCAGCAGTAA

Translation (391 aa):
MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKIL
KPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEI
LKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYD
YSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKR
WERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMSSTSMAGGSTPVSSAN
MMSGISSVPTPSPLGPLAGSPVIAAANSLGIPVPAAAGAQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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