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Report for CCDS30306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30306.1 Public Mus musculus X Gdpd2 23 108 98 CCDS HistoryNCBI Gene:71584Re-query CCDS DB by CCDS ID:30306.1Re-query CCDS DB by GeneID:71584See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30306.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019503.13 ENSMUSP00000019503.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019503.13Link to Ensembl Protein Viewer:ENSMUSP00000019503.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019503Re-query CCDS DB by Protein ID:ENSMUSP00000019503
Original member Current member EBI ENSMUST00000113744.1 ENSMUSP00000109373.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113744.1Link to Ensembl Protein Viewer:ENSMUSP00000109373.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113744Re-query CCDS DB by Protein ID:ENSMUSP00000109373
Original member Current member NCBI NM_001305941.1 NP_001292870.1 Accepted alive Link to Nucleotide Sequence:NM_001305941.1Link to Protein Sequence:NP_001292870.1Re-query CCDS DB by Nucleotide ID:NM_001305941Re-query CCDS DB by Protein ID:NP_001292870Link to BLAST:NP_001292870.1
Original member Current member NCBI NM_001358507.1 NP_001345436.1 Accepted alive Link to Nucleotide Sequence:NM_001358507.1Link to Protein Sequence:NP_001345436.1Re-query CCDS DB by Nucleotide ID:NM_001358507Re-query CCDS DB by Protein ID:NP_001345436Link to BLAST:NP_001345436.1
Original member Current member NCBI NM_023608.4 NP_076097.1 Accepted alive Link to Nucleotide Sequence:NM_023608.4Link to Protein Sequence:NP_076097.1Re-query CCDS DB by Nucleotide ID:NM_023608Re-query CCDS DB by Protein ID:NP_076097Link to BLAST:NP_076097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292870.1 539 Q9ESM6 539 100% 0 0
NP_001345436.1 539 Q9ESM6 539 100% 0 0
NP_076097.1 539 Q9ESM6 539 100% 0 0

Chromosomal Locations for CCDS 30306.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 100732081 100732185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100732396 100732499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100732794 100732887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100733072 100733131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100733374 100733472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100733646 100733739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100733899 100734047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100734170 100734252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100734364 100734514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100736251 100736472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100736689 100736837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100737465 100737612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100737751 100737833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100738117 100738142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100738230 100738282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGCAGATTCCCCCGGCTGCTGCTCCATCTGGGCCCGCTGCCTCCACTGCCTGTACAGCTGCCACTGGA
GGAAATATCCTAAACAGAAGATGCAAACCAGCAAGTGCGACTGTATCTGGTTTGGCCTGCTCTTCCTCAC
CTTCCTCCTGTCCCTGGGATGGCTGTACATCGGGCTCATCCTTCTCAATGATCTGCACAACTTCAATGAA
TTCCTGTTCCGCCATTGGGGACACTGGATGGACTGGTCCCTGATAGTCCTGCTGGTCGTCTCTCTCCTGG
TCACATATGCATCCTTGCTATTGCTCCTGGGCCTGCTCCTGCAACTCTGTGGACAGCCTCTGCATCTTCA
CAGTCTCCACAAGGTGCTGCTGCTCCTCATTGTACTTCTAGTGGCCGCGGGACTGGTGGGCCTGGATATC
CAATGGCGGCAGGAGTGGCATAGTTTACGACTGTCACTGCAGGCCACAGCCCCATTCCTTCACATTGGAG
CAGTTGCTGGAATCACCTTGTTGGCCTGGCCTGTGGCTGATACCTTCTACCGCATCCACCCAAGAGGCCC
CAAGGTTCTGCTACTGTTGCTATTTTTTGGAGTCACTCTGGTCATCTACCTGATGCCGCTGCTGTTCATC
TCTTCCCCCTGCATCATGAAACTCAGAGATTTACCCCCCAAGCCTGGGCTGGTGGGACACCGAGGGGCCC
CCATGCTGGCCCCTGAGAATACCCTGATGTCCCTGAGGAAGACAGCTGAATGTGGAGCGGCTGTGTTTGA
GACAGATGTGATGGTCAGCTCTGACGGAGTCCCCTTTCTCATGCATGATGAGCGACTGAGCAGGACTACC
AATGTAGCCTCTGTGTTTCCAGAGCGAATCTCAGCCCACAGCAGTGACTTCTCCTGGGCTGAACTGCAGA
GACTCAATGCTGGAACCTGGTTCCTAGAGAGGCAACCTTTCTGGGGGGCCAAAAAGCTGTCAGGCTCTGA
TCGGAAGGAGGCTGAGAATCAGACCATACCAGCATTAGAAGAACTACTGAAGGAAGCAGCAGCTCTCAAC
CTTTCCATCATGTTTGACTTGCGCCGACCCCCAAGAAACCACACATACTATGATACTTTTGTGAATCAGA
CACTGGAGGCTGTGTTGAGTGCAAACGTGTCCCAAGCTATGGTTCTTTGGCTCCCAGATGAAGACCGTGC
TAACGTGCAGCAACGCGCCCCCAGAATGCGCCAGATATATGGACATCAGGGAGGCAATTGGACTGAGAGG
CCCCAGTTTCTCAACCTCCCCTATCAAGACCTGCCAGCATTGGATATCAAGGCCCTGCACCAGGATAATA
TCTCAGTGAACCTGTTTGTAGTGAACAAGCCCTGGCTCTTCTCCCTGCTCTGGTGTGCAGGGGTGGATTC
TGTCACCACCAATGCCTGCCAGCTGCTGCAACAGATGCAGAACCCCCTCTGGCTTCTTCCCCCTCAAAAA
TACTTAATGATTTGGGTGATCACCGACTGTGCCTCCATTCTGCTGCTTTTGAGTATCTTCCTCCTCCGAG
GGGGATGTGCTAAGAGAAACAGAACAGGCTTAGAAACAGCAGTGCTACTGACCAAGATCAACAATTTCGC
CTCTGAGTGA

Translation (539 aa):
MADSPGCCSIWARCLHCLYSCHWRKYPKQKMQTSKCDCIWFGLLFLTFLLSLGWLYIGLILLNDLHNFNE
FLFRHWGHWMDWSLIVLLVVSLLVTYASLLLLLGLLLQLCGQPLHLHSLHKVLLLLIVLLVAAGLVGLDI
QWRQEWHSLRLSLQATAPFLHIGAVAGITLLAWPVADTFYRIHPRGPKVLLLLLFFGVTLVIYLMPLLFI
SSPCIMKLRDLPPKPGLVGHRGAPMLAPENTLMSLRKTAECGAAVFETDVMVSSDGVPFLMHDERLSRTT
NVASVFPERISAHSSDFSWAELQRLNAGTWFLERQPFWGAKKLSGSDRKEAENQTIPALEELLKEAAALN
LSIMFDLRRPPRNHTYYDTFVNQTLEAVLSANVSQAMVLWLPDEDRANVQQRAPRMRQIYGHQGGNWTER
PQFLNLPYQDLPALDIKALHQDNISVNLFVVNKPWLFSLLWCAGVDSVTTNACQLLQQMQNPLWLLPPQK
YLMIWVITDCASILLLLSIFLLRGGCAKRNRTGLETAVLLTKINNFASE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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