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Report for CCDS42795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42795.1 Public Homo sapiens 2 TYW5 24 110 108 CCDS HistoryNCBI Gene:129450Re-query CCDS DB by CCDS ID:42795.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42795.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354611.9 ENSP00000346627.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354611.9Link to Ensembl Protein Viewer:ENSP00000346627.4Re-query CCDS DB by Nucleotide ID:ENST00000354611Re-query CCDS DB by Protein ID:ENSP00000346627
Original member Current member NCBI NM_001039693.3 NP_001034782.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039693.3Link to Protein Sequence:NP_001034782.1Re-query CCDS DB by Nucleotide ID:NM_001039693Re-query CCDS DB by Protein ID:NP_001034782Link to BLAST:NP_001034782.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034782.1 315 A2RUC4-1 315 100% 0 0

Chromosomal Locations for CCDS 42795.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 199933067 199933323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199935931 199936047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199936405 199936492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199938933 199939070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199940089 199940133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199943765 199943834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199948318 199948472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199955393 199955470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGCCGGGCAGCACCTCCCGGTACCCCGGCTGGAGGGCGTTTCTCGGGAGCAGTTCATGCAGCACCTCT
ACCCACAGAGAAAACCTCTTGTGTTGGAAGGGATTGATTTGGGGCCATGTACAAGCAAATGGACAGTGGA
TTACCTAAGCCAAGTTGGAGGGAAGAAAGAAGTAAAGATTCATGTTGCTGCAGTTGCACAGATGGACTTC
ATTAGTAAGAACTTTGTATATAGAACTTTACCTTTTGACCAGTTGGTCCAGAGGGCAGCTGAAGAGAAAC
ATAAAGAATTCTTTGTTTCAGAGGATGAGAAATACTACTTACGGTCACTTGGAGAAGACCCTAGAAAGGA
TGTTGCAGATATCAGAAAGCAGTTTCCTTTGTTGAAAGGAGATATTAAGTTTCCAGAATTCTTCAAAGAG
GAACAGTTCTTTTCCAGTGTTTTTCGAATTAGTTCACCAGGATTACAACTATGGACTCATTATGATGTAA
TGGATAATTTGTTAATACAAGTGACAGGAAAAAAGCGTGTTGTACTCTTCAGTCCTCGAGATGCCCAGTA
TTTATATTTAAAAGGTACTAAATCAGAAGTACTGAATATAGATAACCCAGACTTGGCTAAATATCCACTT
TTTTCCAAGGCTAGAAGATATGAATGTTCCCTTGAAGCTGGTGATGTATTATTCATTCCTGCTTTATGGT
TCCATAATGTAATTTCTGAAGAGTTTGGAGTGGGAGTGAATATCTTTTGGAAGCACCTTCCATCTGAATG
CTATGATAAAACAGATACCTATGGAAACAAAGATCCTACAGCAGCATCAAGAGCTGCACAAATTCTGGAC
AGAGCCTTGAAAACACTGGCCGAGTTACCAGAGGAATATAGGGACTTCTATGCACGACGAATGGTCCTAC
ACATTCAAGACAAAGCCTACAGCAAGAACTCTGAGTAA

Translation (315 aa):
MAGQHLPVPRLEGVSREQFMQHLYPQRKPLVLEGIDLGPCTSKWTVDYLSQVGGKKEVKIHVAAVAQMDF
ISKNFVYRTLPFDQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQFPLLKGDIKFPEFFKE
EQFFSSVFRISSPGLQLWTHYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPL
FSKARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPSECYDKTDTYGNKDPTAASRAAQILD
RALKTLAELPEEYRDFYARRMVLHIQDKAYSKNSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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