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Report for CCDS13153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13153.1 Public Homo sapiens 20 CSTL1 24 110 108 CCDS HistoryNCBI Gene:128817Re-query CCDS DB by CCDS ID:13153.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13153.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246020.3 ENSP00000246020.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000246020.3Link to Ensembl Protein Viewer:ENSP00000246020.2Re-query CCDS DB by Nucleotide ID:ENST00000246020Re-query CCDS DB by Protein ID:ENSP00000246020
Original member Current member EBI ENST00000347397.5 ENSP00000344907.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000347397.5Link to Ensembl Protein Viewer:ENSP00000344907.1Re-query CCDS DB by Nucleotide ID:ENST00000347397Re-query CCDS DB by Protein ID:ENSP00000344907
Original member Current member NCBI NM_138283.1 NP_612140.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138283.1Link to Protein Sequence:NP_612140.1Re-query CCDS DB by Nucleotide ID:NM_138283Re-query CCDS DB by Protein ID:NP_612140Link to BLAST:NP_612140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612140.1 145 Q9H114 145 100% 0 0

Chromosomal Locations for CCDS 13153.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 23440268 23440486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23443934 23444044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23444771 23444878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGGGGATCGGATGCTGGAGAAACCCCCTGCTGCTGCTGATTGCCCTGGTCCTGTCAGCCAAGCTGGGTC
ACTTCCAAAGGTGGGAGGGCTTCCAGCAGAAGCTCATGAGCAAGAAGAACATGAATTCAACACTCAACTT
CTTCATTCAATCCTACAACAATGCCAGCAACGACACCTACTTATATCGAGTCCAGAGGCTAATTCGAAGT
CAGATGCAGCTGACGACGGGAGTGGAGTATATAGTCACTGTGAAGATTGGCTGGACCAAATGCAAGAGGA
ATGACACGAGCAATTCTTCCTGCCCCCTGCAAAGCAAGAAGCTGAGAAAGAGTTTAATTTGCGAGTCTTT
GATATACACCATGCCCTGGATAAACTATTTCCAGCTCTGGAACAATTCCTGTCTGGAGGCCGAGCATGTG
GGCAGAAACCTCAGATGA

Translation (145 aa):
MGIGCWRNPLLLLIALVLSAKLGHFQRWEGFQQKLMSKKNMNSTLNFFIQSYNNASNDTYLYRVQRLIRS
QMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPLQSKKLRKSLICESLIYTMPWINYFQLWNNSCLEAEHV
GRNLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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