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Report for CCDS33439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33439.1 Public Homo sapiens 20 SLX4IP 24 110 108 CCDS HistoryNCBI Gene:128710Re-query CCDS DB by CCDS ID:33439.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33439.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334534.10 ENSP00000335557.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334534.10Link to Ensembl Protein Viewer:ENSP00000335557.5Re-query CCDS DB by Nucleotide ID:ENST00000334534Re-query CCDS DB by Protein ID:ENSP00000335557
Original member Current member NCBI NM_001009608.3 NP_001009608.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001009608.3Link to Protein Sequence:NP_001009608.1Re-query CCDS DB by Nucleotide ID:NM_001009608Re-query CCDS DB by Protein ID:NP_001009608Link to BLAST:NP_001009608.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009608.1 408 Q5VYV7 408 100% 0 0

Chromosomal Locations for CCDS 33439.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 10458205 10458231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10556231 10556320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10560700 10560820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10598675 10598752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10601731 10601819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10621314 10621414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10622659 10623379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGGCATCTAAGAAATTTGCTGTTAAATGTGGGAATTTTGCTGTCCTCGTGGATCTTCATATCTTGCCAC
AAGGTTCAAACAAAGATACAAGCTGGTTTTCTGAACAGAAGAAAGAGGAAGTCTGTTTACTGTTAAAAGA
AACCATTGATTCAAGAGTTCAGGAGTACTTGGAAGTTCGCAAACAGCACAGGCCATCAAATGCAGAATTC
ACAAGATCCAATCCCTTGTCCTTAAAAGGTTATGGCTTTCAAATCACAGCCTATTTCCTCAAGAGAGGGA
TACGCCTTCGCTGCATCAGGAGCACACAGAATGCTGAACTCTGTGTATTCCCTGACAGATTTGTGGTTTG
TGTCAGTCAGCTTGCATTCAGTCGTGATCTTTTAGCAAGTCAGAATGAAGATTTGACAGAAAGAGTTCTC
CATGGAGTGTCTGATTACTTTGCTGAGTGTGCAGAGAGTTCACTTCCTCCCAGTGCAAAGCTCCGGAGAA
ATGCTCTGAAAGAAATTGTGAAAAGAACTGAAACAAAAAGCAGTGTCACGAGCAAATCGCAGACCAGAAG
AGACACTGTGGAAACATCTAGTGACTCAGTGATTGCAGAGATAGCAAGGAGGAGGAATGATGGTCAGGCT
TCCTCCAGTCCCCCATCAGAATCCATGGGACAAGCAAAGGATTCCATAAAGGCAGCTGAGAGCCACTGGG
GGCTTCCTGTTCAAAAGCTGGAAAAAGTTAATCAGACCCAGCCAGAAGACACTAGTGGCCAGCAAAAACC
TCATCCTGGGGAGCGGTTAAAGACAGGGCTTCTAAGCAGGAGCCCCGTCTGTAGCTGTGAGTCAGCATCA
CCATGTCCAAAACAAAGTCCACGAGTGGCCAAAACCCAACAGAAACGCAGGAACTGCAGCTCTGCGGAAG
ACTTCGACCACCACGGGAGAGTTTCTCTTGGAAGTGATCGATTAGTCCCGAGAGAAATAATAGTGGAAAA
AAGCAAAGCTGTCAGGGTTTTGCCAGCTTCAGAGTTGTCAGATCCAGGGTTACTTTTGAAACAAGATTTG
GCAAAAACCACGTCTAAGGAAGAGTTGCATGTTTTGGAAAGTCTCTCCTCCAGACATCTTATGAAAAATA
ACCCAGGGCAGGCACAGCAAACCGGCTTAGCCACAAACACTGAAAGATTATCTACAATTCAGAACAGCCC
AACCAAGAAAAGAAAGAAATACGAAAGAGGCCATTAA

Translation (408 aa):
MASKKFAVKCGNFAVLVDLHILPQGSNKDTSWFSEQKKEEVCLLLKETIDSRVQEYLEVRKQHRPSNAEF
TRSNPLSLKGYGFQITAYFLKRGIRLRCIRSTQNAELCVFPDRFVVCVSQLAFSRDLLASQNEDLTERVL
HGVSDYFAECAESSLPPSAKLRRNALKEIVKRTETKSSVTSKSQTRRDTVETSSDSVIAEIARRRNDGQA
SSSPPSESMGQAKDSIKAAESHWGLPVQKLEKVNQTQPEDTSGQQKPHPGERLKTGLLSRSPVCSCESAS
PCPKQSPRVAKTQQKRRNCSSAEDFDHHGRVSLGSDRLVPREIIVEKSKAVRVLPASELSDPGLLLKQDL
AKTTSKEELHVLESLSSRHLMKNNPGQAQQTGLATNTERLSTIQNSPTKKRKKYERGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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