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Report for CCDS33473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33473.1 Public Homo sapiens 20 FITM2 24 110 108 CCDS HistoryNCBI Gene:128486Re-query CCDS DB by CCDS ID:33473.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33473.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396825.4 ENSP00000380037.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396825.4Link to Ensembl Protein Viewer:ENSP00000380037.3Re-query CCDS DB by Nucleotide ID:ENST00000396825Re-query CCDS DB by Protein ID:ENSP00000380037
Original member Current member NCBI NM_001080472.4 NP_001073941.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080472.4Link to Protein Sequence:NP_001073941.1Re-query CCDS DB by Nucleotide ID:NM_001080472Re-query CCDS DB by Protein ID:NP_001073941Link to BLAST:NP_001073941.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073941.1 262 Q8N6M3 262 100% 0 0

Chromosomal Locations for CCDS 33473.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 44306625 44307240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44310976 44311148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGAGCATCTGGAGCGCTGCGAGTGGTTGTTGCGGGGGACGCTGGTGCGGGCGGCCGTGCGGCGCTACC
TGCCCTGGGCCCTGGTGGCCTCCATGCTGGCGGGCTCCCTCCTCAAGGAGTTGTCCCCGTTGCCCGAGAG
CTACCTCAGCAACAAGCGCAACGTCCTCAACGTGTATTTTGTCAAAGTGGCCTGGGCCTGGACGTTCTGT
CTCCTTCTGCCTTTCATTGCCCTCACCAACTACCATCTGACCGGCAAGGCTGGCTTGGTCCTGCGGCGGC
TGAGCACCCTGCTTGTGGGCACGGCCATCTGGTACATCTGCACCTCCATCTTCTCCAACATCGAACACTA
CACGGGCAGCTGCTACCAGTCCCCAGCCCTGGAGGGGGTCAGAAAGGAACACCAGAGCAAGCAGCAGTGC
CACCAGGAAGGGGGCTTTTGGCATGGCTTTGACATCTCAGGTCACTCCTTCCTGCTGACCTTCTGCGCCC
TCATGATTGTAGAAGAGATGTCTGTGCTGCATGAGGTGAAGACGGACCGAAGCCACTGCCTCCACACCGC
CATCACCACCCTGGTTGTGGCCCTGGGCATTCTGACTTTCATCTGGGTGTTGATGTTTCTGTGCACAGCT
GTTTATTTCCACAACTTGTCCCAGAAGGTGTTTGGCACCTTGTTTGGTTTGCTGAGCTGGTACGGGACAT
ACGGGTTTTGGTATCCGAAAGCCTTTTCCCCAGGACTTCCTCCCCAGAGCTGTAGTTTGAATTTGAAGCA
AGATAGTTACAAGAAATAA

Translation (262 aa):
MEHLERCEWLLRGTLVRAAVRRYLPWALVASMLAGSLLKELSPLPESYLSNKRNVLNVYFVKVAWAWTFC
LLLPFIALTNYHLTGKAGLVLRRLSTLLVGTAIWYICTSIFSNIEHYTGSCYQSPALEGVRKEHQSKQQC
HQEGGFWHGFDISGHSFLLTFCALMIVEEMSVLHEVKTDRSHCLHTAITTLVVALGILTFIWVLMFLCTA
VYFHNLSQKVFGTLFGLLSWYGTYGFWYPKAFSPGLPPQSCSLNLKQDSYKK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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