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Report for CCDS33507.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
33507.2 |
Public |
Homo sapiens |
20 |
BHLHE23 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:128408](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:33507.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 20 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 33507.1 |
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data and by conservation in primates. |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 33507.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000612929.2 |
ENSP00000480998.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000612929.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000480998.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000612929](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000480998](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_080606.4 |
NP_542173.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_080606.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_542173.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_080606](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_542173](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_542173.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 33507.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (726 nt): ATGAGCATCCGCCCACCCGGCGAGCCCCCGAGCCCAGGCGGCGCGGCCATGGCCGAGCTCAAGTCGCTGT CGGGGGACGCGTACCTGGCACTAAGCCACGGCTACGCGGCGGCGGCTGCGGGTCTCGCCTACGGGGCGGC GCGAGAACCCGAAGCGGCCCGCGGCTACGGCACTCCGGGCCCGGGCGGCGACCTCCCCGCGGCGCCTGCA CCTCGCGCCCCAGCTCAGGCGGCGGAGAGCAGCGGCGAACAGAGCGGGGACGAGGACGACGCCTTCGAGC AGCGGCGGCGGCGGCGCGGGCCAGGGAGCGCGGCGGACGGGCGGCGGCGGCCGCGAGAGCAGCGGTCTCT GCGGCTCAGCATCAACGCGCGCGAGCGGCGGCGCATGCACGACCTAAACGACGCGCTGGACGGGCTGCGA GCCGTCATCCCCTACGCGCACAGCCCGTCGGTGCGCAAGCTCTCCAAGATCGCCACGCTGCTGCTCGCCA AGAACTATATCCTCATGCAGGCGCAGGCCCTGGACGAGATGCGGCGCCTGGTGGCCTTCCTCAACCAGGG CCAGGGCCTGGCCGCGCCCGTAAACGCCGCGCCCTTGACGCCCTTCGGCCAGGCCACTGTGTGCCCCTTC TCCGCAGGCGCCGCCCTGGGGCCCTGCCCTGACAAGTGCGCCGCCTTCTCCGGGACGCCCTCCGCGCTTT GCAAACACTGTCACGAGAAGCCGTGA
Translation (241 aa): MSIRPPGEPPSPGGAAMAELKSLSGDAYLALSHGYAAAAAGLAYGAAREPEAARGYGTPGPGGDLPAAPA PRAPAQAAESSGEQSGDEDDAFEQRRRRRGPGSAADGRRRPREQRSLRLSINARERRRMHDLNDALDGLR AVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALDEMRRLVAFLNQGQGLAAPVNAAPLTPFGQATVCPF SAGAALGPCPDKCAAFSGTPSALCKHCHEKP
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