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Report for CCDS170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
170.1 Public Homo sapiens 1 ARHGEF19 24 110 108 CCDS HistoryNCBI Gene:128272Re-query CCDS DB by CCDS ID:170.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 170.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000270747.8 ENSP00000270747.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000270747.8Link to Ensembl Protein Viewer:ENSP00000270747.3Re-query CCDS DB by Nucleotide ID:ENST00000270747Re-query CCDS DB by Protein ID:ENSP00000270747
Original member Current member NCBI NM_153213.5 NP_694945.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153213.5Link to Protein Sequence:NP_694945.2Re-query CCDS DB by Nucleotide ID:NM_153213Re-query CCDS DB by Protein ID:NP_694945Link to BLAST:NP_694945.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694945.2 802 Q8IW93-1 802 100% 0 0

Chromosomal Locations for CCDS 170.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16198587 16198744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16199150 16199254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16201782 16201861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16202416 16202574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16204759 16204919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16205087 16205176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16205351 16205425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16205538 16205667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16205931 16206083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16206180 16206340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16206948 16207210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16207522 16207598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16207675 16207777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16207944 16208225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16208643 16209054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2409 nt):
ATGGACTGTGGGCCACCTGCTACCCTCCAGCCCCACCTGACTGGGCCACCTGGCACTGCCCACCACCCTG
TAGCAGTGTGCCAGCAGGAGAGTCTGTCCTTTGCAGAGCTGCCCGCCCTGAAGCCCCCGAGCCCAGTGTG
TCTGGACCTTTTCCCTGTTGCCCCAGAGGAGCTTCGGGCTCCTGGCAGCCGCTGGTCCCTGGGGACCCCT
GCCCCTCTCCAAGGGTTGCTATGGCCATTATCCCCAGGAGGCTCAGATACAGAGATCACCAGCGGGGGGA
TGCGGCCCAGCAGGGCTGGCAGCTGGCCACACTGTCCTGGTGCCCAGCCCCCAGCTCTGGAGGGACCCTG
GAGTCCCCGACACACACAGCCACAGCGCCGGGCCAGCCACGGCTCGGAGAAGAAGTCTGCCTGGCGCAAG
ATGCGGGTGTACCAGCGTGAAGAGGTCCCCGGCTGCCCCGAGGCCCACGCTGTCTTCCTAGAGCCTGGCC
AGGTAGTGCAAGAGCAGGCCCTGAGCACAGAGGAGCCCAGGGTGGAGTTGTCTGGGTCCACCCGAGTGAG
CCTCGAAGGTCCTGAGCGGAGGCGCTTCTCGGCATCGGAGCTGATGACCCGGCTGCACTCTTCTCTGCGC
CTGGGGCGGAATTCAGCAGCCCGGGCACTCATCTCTGGGTCAGGCACCGGAGCAGCCCGGGAAGGGAAAG
CATCTGGAATGGAGGCTCGAAGTGTAGAGATGAGCGGGGACCGGGTGTCGCGGCCAGCCCCTGGTGACTC
ACGAGAGGGCGATTGGTCCGAGCCCAGGCTAGACACACAGGAAGAGCCGCCTTTGGGGTCCAGGAGCACC
AACGAGCGGCGCCAGTCTCGATTCCTCCTTAACTCCGTCCTCTATCAGGAATACAGCGACGTGGCCAGCG
CCCGCGAACTGCGGCGGCAGCAGCGCGAGGAGGAGGGCCCGGGGGACGAGGCCGAGGGCGCAGAGGAGGG
GCCGGGGCCGCCGCGGGCCAACCTCTCCCCCAGCAGCTCCTTCCGGGCGCAGCGCTCGGCGCGAGGCTCC
ACCTTCTCGCTGTGGCAGGATATCCCCGACGTACGCGGCAGCGGCGTCCTGGCCACGCTGAGCCTGCGGG
ACTGCAAGCTGCAGGAGGCCAAGTTTGAGCTGATCACCTCCGAGGCCTCCTACATCCACAGCCTGTCGGT
GGCTGTGGGCCACTTCTTAGGCTCTGCCGAGCTGAGCGAGTGTCTGGGGGCGCAGGACAAGCAGTGGCTG
TTTTCCAAACTGCCCGAGGTCAAGAGCACCAGCGAGAGGTTCCTGCAGGACCTGGAGCAGCGGCTGGAGG
CAGATGTGCTGCGCTTCAGCGTGTGCGACGTGGTGCTGGACCACTGCCCGGCCTTCCGCAGAGTCTACCT
GCCCTATGTCACCAACCAGGCCTACCAGGAGCGCACCTACCAGCGCCTGCTCCTGGAGAACCCCAGGTTC
CCTGGCATCCTGGCTCGCCTGGAGGAGTCTCCTGTGTGCCAGCGTCTGCCCCTTACCTCCTTCCTTATCC
TGCCCTTCCAGAGGATCACCCGCCTCAAGATGTTGGTGGAGAACATCCTGAAGCGGACAGCACAGGGCTC
TGAAGACGAAGACATGGCCACCAAGGCCTTCAATGCGCTCAAGGAGCTGGTGCAGGAGTGCAATGCTAGT
GTACAGTCCATGAAGAGGACAGAGGAACTCATCCACCTGAGCAAGAAGATCCACTTTGAGGGCAAGATTT
TCCCGCTGATCTCTCAGGCCCGCTGGCTGGTTCGGCATGGAGAGTTGGTAGAGCTGGCACCACTGCCTGC
AGCACCCCCTGCCAAGCTGAAGCTGTCCAGCAAGGCAGTCTACCTCCACCTCTTCAATGACTGCTTGCTG
CTCTCTCGGCGGAAGGAGCTAGGGAAGTTTGCCGTTTTCGTCCATGCCAAGATGGCTGAGCTGCAGGTGC
GGGACCTGAGCCTGAAGCTGCAGGGCATCCCCGGCCACGTGTTCCTCCTCCAGCTCCTCCACGGGCAGCA
CATGAAGCACCAGTTCCTGCTGCGGGCCCGGACGGAAAGTGAGAAGCAGCGATGGATCTCAGCCTTGTGC
CCCTCCAGCCCCCAGGAGGACAAGGAGGTCATCAGTGAGGGGGAAGATTGCCCCCAGGTTCAGTGTGTTA
GGACATACAAGGCACTGCACCCAGATGAGCTGACCTTGGAGAAGACTGACATCCTGTCAGTGAGGACCTG
GACCAGTGACGGCTGGCTGGAAGGGGTCCGCCTGGCAGATGGTGAGAAGGGGTGGGTGCCCCAGGCCTAT
GTGGAAGAGATCAGCAGCCTCAGCGCCCGCCTCCGAAACCTCCGGGAGAATAAGCGAGTCACAAGTGCCA
CCAGCAAACTGGGGGAGGCTCCTGTGTGA

Translation (802 aa):
MDCGPPATLQPHLTGPPGTAHHPVAVCQQESLSFAELPALKPPSPVCLDLFPVAPEELRAPGSRWSLGTP
APLQGLLWPLSPGGSDTEITSGGMRPSRAGSWPHCPGAQPPALEGPWSPRHTQPQRRASHGSEKKSAWRK
MRVYQREEVPGCPEAHAVFLEPGQVVQEQALSTEEPRVELSGSTRVSLEGPERRRFSASELMTRLHSSLR
LGRNSAARALISGSGTGAAREGKASGMEARSVEMSGDRVSRPAPGDSREGDWSEPRLDTQEEPPLGSRST
NERRQSRFLLNSVLYQEYSDVASARELRRQQREEEGPGDEAEGAEEGPGPPRANLSPSSSFRAQRSARGS
TFSLWQDIPDVRGSGVLATLSLRDCKLQEAKFELITSEASYIHSLSVAVGHFLGSAELSECLGAQDKQWL
FSKLPEVKSTSERFLQDLEQRLEADVLRFSVCDVVLDHCPAFRRVYLPYVTNQAYQERTYQRLLLENPRF
PGILARLEESPVCQRLPLTSFLILPFQRITRLKMLVENILKRTAQGSEDEDMATKAFNALKELVQECNAS
VQSMKRTEELIHLSKKIHFEGKIFPLISQARWLVRHGELVELAPLPAAPPAKLKLSSKAVYLHLFNDCLL
LSRRKELGKFAVFVHAKMAELQVRDLSLKLQGIPGHVFLLQLLHGQHMKHQFLLRARTESEKQRWISALC
PSSPQEDKEVISEGEDCPQVQCVRTYKALHPDELTLEKTDILSVRTWTSDGWLEGVRLADGEKGWVPQAY
VEEISSLSARLRNLRENKRVTSATSKLGEAPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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