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Report for CCDS614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
614.1 Public Homo sapiens 1 C1orf87 24 110 108 CCDS HistoryNCBI Gene:127795Re-query CCDS DB by CCDS ID:614.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 614.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371201.3 ENSP00000360244.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371201.3Link to Ensembl Protein Viewer:ENSP00000360244.3Re-query CCDS DB by Nucleotide ID:ENST00000371201Re-query CCDS DB by Protein ID:ENSP00000360244
Original member Current member NCBI NM_152377.3 NP_689590.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152377.3Link to Protein Sequence:NP_689590.1Re-query CCDS DB by Nucleotide ID:NM_152377Re-query CCDS DB by Protein ID:NP_689590Link to BLAST:NP_689590.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689590.1 546 Q8N0U7-1 546 100% 0 0

Chromosomal Locations for CCDS 614.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 59990673 59990833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59997609 59997816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60001077 60001156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60010392 60010456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60025401 60025498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60033476 60033641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60037992 60038107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60039917 60040180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60040991 60041131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60055204 60055438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60072537 60072643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGTCTTCAGCCTGGAAGACTCCCCGTGGATCAGATGCAATGCCTGAGATCATGGTGAAAATCATTGGAA
GTAAACACTTTCAATACCTCGTGGAGAAGCCAAAGATCAAGGAGAATGACAGCTTGAAAACAGAAACCCA
AACAATGCACCAGAAACCAATGACTGATAATGCAAGGCAGATGAGCAGAGACACCCCAGTTCCCATTAAC
TTCACTGATCAGCAAACCACTGATAATCCAGATGATGTGAAAGAGAAAAAGCACCCAGAGAACAACCAGA
AATCAGAAAACAACCAGAAACTACTAACAGGGGCAAACAGTAGCAGATTCCTGGATGGCAATATTCCCAG
TCAAGCAAATGTCCACTGCAGCTCTGTACCAACCGGAGACCAGTCCTTATCCTATGTGCATGGCATTCCC
AGGAGAAAGCTTAGAGACTGGTCCTTGGAACAGATGGTGAGAGGCAGCTCTGACCAACCTGAGGATATTG
GCCAGAGCCCAAGTGGGACAACAAATGAAGACGCTTTTCTTCTTGCCCTGGTCAGAAGAGAACTCAAGTC
ACGTCCTTTGAGTTCCAACTTATTAGAAAAGCTTCAGAAAGAGCTGAAGATCCTGGACCCAATCTCTTCA
GGATTTCTTCTCCAATCTCAGCTGAGCCGCCTCTTTTTGAAGCATGAAGTCCCTCTACAGTTACCAACAG
TTAAAATCCTTTGTCAGAGATTTTCTAAGAGGGGTTCTCCTGAAATGGTGAATTATGAAAAGCTACTCTG
GTTTTTAAACAGTGCAGCATCAGATTATCCACAGCAAAATAAAGCAGCTGCAGACCTGAGAAAAACTGAG
AGTCATGGCACTCATAGCCAAAGCACTCCACCTCAGCACTCCAGCTCACAGCCAGAAGTGAACAGGAGTC
TGTTGGAGATTTTGAAGATGGCACTAAGGACAACCAATGGCAGACTCAACATAGACAATCTCAATCTGAG
TTTTCGAAAAGAAGATCGCTCGTTCTCTGGCTGCCTCCCTCTACCTAAGGTCAGGGCTATATGTGGGAAG
CATGGATTATATCTGACCCTGAGCCTGCTGGAAACATTGCTTAACCATCAAGATTTGGGTTACCAAAATG
AAATAAAATGGCAGAATTTTGTTGAGATGCTGACCAGAGCTTCTTCTGATTTGTTATCTGATTTGCCTAC
AGGGAAGAATGAAAAGAAAGCCCCTGCCCCTCCAATGGAGCCTGAAGTCCCCGAGATGTCTCAAAGCAAA
ACTGAACATATGAAAACTCCAGAAGAGGAGCTGCAGCCAGAAAGCTCTCCTGCTGAAACTTCAGCCTGCA
AAGATCCTCTGAAACCTTTAAAGATCAGGCCAGTCTCCCAGCCCTTCGTGAATCCAGCTGTGAAGAACAA
GGCTGAGGAATGTGAGACGTGGATAGACAGGTTCAGGAAGCTGGAAAATGCCCTCTACCTGTGTGATCTG
AGTAACACAGGAGTTCTGGAGAAGGAACGAGCCAGACGCCTCATTCACAACTACAATCTCATTTACAACC
TGTCCCTGAGCCCTCAGAAAATCGACCAGGCCTTGCGCAGATTCCGTTCGGGAGAAAATATGCTCTTGGA
GCCAGCACTGCGGTACTTAAAGGAGCTATGA

Translation (546 aa):
MSSAWKTPRGSDAMPEIMVKIIGSKHFQYLVEKPKIKENDSLKTETQTMHQKPMTDNARQMSRDTPVPIN
FTDQQTTDNPDDVKEKKHPENNQKSENNQKLLTGANSSRFLDGNIPSQANVHCSSVPTGDQSLSYVHGIP
RRKLRDWSLEQMVRGSSDQPEDIGQSPSGTTNEDAFLLALVRRELKSRPLSSNLLEKLQKELKILDPISS
GFLLQSQLSRLFLKHEVPLQLPTVKILCQRFSKRGSPEMVNYEKLLWFLNSAASDYPQQNKAAADLRKTE
SHGTHSQSTPPQHSSSQPEVNRSLLEILKMALRTTNGRLNIDNLNLSFRKEDRSFSGCLPLPKVRAICGK
HGLYLTLSLLETLLNHQDLGYQNEIKWQNFVEMLTRASSDLLSDLPTGKNEKKAPAPPMEPEVPEMSQSK
TEHMKTPEEELQPESSPAETSACKDPLKPLKIRPVSQPFVNPAVKNKAEECETWIDRFRKLENALYLCDL
SNTGVLEKERARRLIHNYNLIYNLSLSPQKIDQALRRFRSGENMLLEPALRYLKEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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